Table 2.
Phylum | Class | Order | Suborder | Family | Species | N | GC class | GC, % | σGC | GC1, % | σGC1 | GC2, % | σGC2 | GC3, % | σGC3 | Fra |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Firmicutes | Bacilli | Bacillales | NA | Staphylococcaceae | Staphylococcus saprophyticus | 1844 | Poor | 33.8 | 4.6 | 46.8 | 5.4 | 31.7 | 4.6 | 22.9 | 3.8 | Lb |
Proteobacteria | α-Proteobacteria | Rickettsiales | NA | Anaplasmataceae | Wolbachia sp. | 1037 | Poor | 34.4 | 4.5 | 44.3 | 4.8 | 32.9 | 4.3 | 26.1 | 4.3 | Endoc |
Proteobacteria | γ-Proteobacteria | Pasteurellales | NA | Pasteurellaceae | Haemophilus somnus | 1601 | Poor | 37.5 | 5.1 | 49.5 | 5.1 | 34.9 | 4.5 | 28.3 | 5.7 | L |
Firmicutes | Bacilli | Lactobacillales | NA | Enterococcaceae | Enterococcus faecalis | 2249 | Poor | 37.8 | 4.7 | 49.4 | 5.0 | 34.3 | 4.7 | 29.8 | 4.5 | L |
Firmicutes | Bacilli | Lactobacillales | NA | Streptococcaceae | Streptococcus oralis | 1451 | Poor | 41.3 | 5.9 | 52.2 | 5.8 | 34.0 | 4.6 | 37.7 | 7.2 | L |
Proteobacteria | γ-Proteobacteria | Oceanospirillales | NA | Oceanospirillaceae | Marinomonas posidonica | 2795 | Poor | 44.6 | 4.6 | 54.0 | 4.4 | 37.9 | 3.9 | 41.7 | 5.3 | L |
Proteobacteria | γ-Proteobacteria | Enterobacteriales | NA | Enterobacteriaceae | Arsenophonus nasoniae | 306 | Poor | 42.3 | 6.0 | 45.2 | 5.9 | 39.6 | 6.0 | 42.2 | 6.1 | Endo |
Proteobacteria | γ-Proteobacteria | Enterobacteriales | NA | Enterobacteriaceae | Pectobacterium carotovorum | 3322 | Rich | 52.2 | 6.4 | 59.0 | 6.0 | 40.9 | 4.7 | 56.7 | 8.6 | L |
Proteobacteria | γ-Proteobacteria | Enterobacteriales | NA | Enterobacteriaceae | Erwinia amylovora | 2478 | Rich | 53.9 | 6.7 | 60.2 | 6.4 | 41.7 | 4.9 | 59.6 | 9.0 | L |
Actinobacteria | Actinobacteria | Actinomycetales | Corynebacterineae | Dietziaceae | Dietzia spp. | 157 | Rich | 68.0 | 4.7 | 69.1 | 5.3 | 66.3 | 4.3 | 68.6 | 4.4 | Hd |
Proteobacteria | γ-Proteobacteria | Enterobacteriales | NA | Enterobacteriaceae | Serratia marcescens | 3620 | Rich | 59.4 | 7.5 | 63.2 | 6.6 | 42.7 | 5.1 | 72.5 | 10.8 | H |
Proteobacteria | β-Proteobacteria | Burkholderiales | NA | Comamonadaceae | Comamonas testosteroni | 3941 | Rich | 62.0 | 6.2 | 65.2 | 5.3 | 45.9 | 4.9 | 74.8 | 8.3 | L |
Actinobacteria | Actinobacteria | Actinomycetales | Corynebacterineae | Mycobacteriaceae | Mycobacterium marinum | 4464 | Rich | 65.6 | 5.4 | 68.0 | 4.9 | 50.6 | 5.5 | 78.0 | 5.8 | H |
Proteobacteria | α-Proteobacteria | Rhizobiales | NA | Bradyrhizobiaceae | Bradyrhizobium japonicum | 7029 | Rich | 64.0 | 6.1 | 65.1 | 4.9 | 47.9 | 4.9 | 78.9 | 8.6 | L |
Actinobacteria | Actinobacteria | Actinomycetales | Corynebacterineae | Gordoniaceae | Gordonia polyisoprenivorans | 3870 | Rich | 67.1 | 5.4 | 69.0 | 5.0 | 51.1 | 5.2 | 81.3 | 6.0 | H |
Actinobacteria | Actinobacteria | Actinomycetales | NA | Propionibacteriaceae | Propionibacterium propionicum | 2292 | Rich | 66.4 | 6.3 | 68.4 | 5.5 | 49.2 | 5.4 | 81.6 | 8.0 | L |
Proteobacteria | γ-Proteobacteria | Xanthomonadales | NA | Xanthomonadaceae | Stenotrophomonas maltophilia | 3275 | Rich | 67.2 | 5.7 | 69.8 | 5.6 | 48.8 | 5.4 | 83.0 | 6.2 | L |
Actinobacteria | Actinobacteria | Actinomycetales | Corynebacterineae | Corynebacteriaceae | Corynebacterium terpenotabidum | 1861 | Rich | 67.3 | 5.4 | 68.8 | 5.1 | 49.7 | 5.3 | 83.3 | 5.7 | H |
Actinobacteria | Actinobacteria | Actinomycetales | Corynebacterineae | Nocardiaceae | Rhodococcus opacus | 5908 | Rich | 67.9 | 5.7 | 69.7 | 4.9 | 50.6 | 5.3 | 83.5 | 6.7 | H |
Proteobacteria | α-Proteobacteria | Rhizobiales | NA | Xanthobacteraceae | Xanthobacter autotrophicus | 3783 | Rich | 67.6 | 6.0 | 69.1 | 5.6 | 49.7 | 5.3 | 84.0 | 7.3 | L |
Proteobacteria | γ-Proteobacteria | Pseudomonadales | NA | Pseudomonadaceae | Pseudomonas aeruginosa | 4627 | Rich | 66.6 | 6.4 | 68.7 | 5.8 | 46.8 | 5.8 | 84.3 | 7.5 | L |
Proteobacteria | α-Proteobacteria | Sphingomonadales | NA | Sphingomonadaceae | Sphingomonas wittichii | 4069 | Rich | 68.7 | 5.9 | 69.3 | 5.6 | 50.0 | 5.2 | 86.7 | 6.9 | L |
Abbreviation: NA, not available.
Fr is for the frequency of bacterial species reported in Gumiel et al.8
L is for low frequency.
Endo is for endosymbiont.
H is for high frequency and is highlighted in gray background.
The shading regions in Table 2 is to improve the contrast between GC-rich (gray) and GC-poor (white) genomes.