Table 9.
List of the most interesting genes underlying the QTLs
| Gene | Chr | Start position |
Stop position |
QTL | Distance from mk (in kb) | Kinase | Kinase sub-group |
Annotation (MSU) |
|---|---|---|---|---|---|---|---|---|
| Os01g41340 | 1 | 23 392 955 | 23 394 611 | qj01–1 | IN | No | OsFBL1; F-box domain- and LRR-containing protein | |
| Os01g41530 | 1 | 23 510 098 | 23 512 343 | qj01–1 | IN | No | OsFBL2; F-box domain- and LRR-containing protein | |
| Os01g48850 | 1 | 28 028 738 | 28 032 031 | qj01–4 | 46.1 | No | Auxin-responsive protein putative | |
| Os01g67290 | 1 | 39 052 262 | 39 058 974 | qj01–6 | 43.3 | No | OsSPR1; cyclin-related protein putative | |
| Os01g67340 | 1 | 39 091 728 | 39 095 339 | qj01–6 | 6.9 | Yes | RLCK-VIII | STRUBBELIG-RECEPTOR FAMILY 8 precursor putative |
| Os01g71310 | 1 | 41 300 203 | 41 303 044 | qj01–7 | IN | No | OsCKX4; cytokinin dehydrogenase precursor | |
| Os02g41650 | 2 | 24 985 255 | 24 989 388 | qj02–3 | 8.8 | No | Phenylalanine ammonia-lyase protein (PAL) putative | |
| Os02g52860 | 2 | 32 319 364 | 32 323 332 | qj02–2 | 9.9 | No | OsPT15; phosphate carrier protein mitochondrial precursor | |
| Os02g52990 | 2 | 32 418 493 | 32 419 361 | qj02_2 | IN | No | OsSAUR12; auxin-responsive SAUR gene family member | |
| Os04g51890 | 4 | 30 783 636 | 30 784 530 | qj04–1 | 24.4 | No | OsSAUR20; auxin-responsive SAUR gene family member | |
| Os05g11730 | 5 | 6 657 481 | 6 661 493 | qj05–4 | 42.3 | Yes | GSK2 | CGMC_GSK.7; CGMC includes CDA, MAPK, GSK3, and CLKC kinases |
| Os06g35930 | 6 | 20 960 706 | 20 961 819 | qj06–4 | 34.5 | No | NIP1;4; aquaporin protein, putative | |
| Os07g36900 | 7 | 22 095 130 | 22 099 277 | qi07–3 | 6.1 | No | OsFBL39; F-box domain and LRR-containing protein | |
| Os09g20740 | 9 | 12 494 569 | 12 498 572 | qi09–1 | 20.3 | Yes | WAK | OsWAK79; OsWAK receptor-like protein kinase |
| Os10g42750 | 10 | 23 062 454 | 23 066 292 | qj10–1 | 30.2 | No | OsCSLD1; cellulose synthase-like family D | |
| Os11g07230 | 11 | 3 633 303 | 3 638 663 | qj11–1 | IN | Yes | LRR-XII | Receptor kinase, putative |
| Os11g07240 | 11 | 3 640 868 | 3 644 003 | qj11–1 | IN | LRR-RLK | SG_XIIa-6c | Serine/threonine-protein kinase BRI1-like 2 precursor, putative |
| Os11g39370 | 11 | 23 431 233 | 23 436 807 | qj11–4 | 2.1 | Yes | OsSERL1 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor |