Table 2.
Differentially expressed miRNAs and their differentially expressed target genes.
| Differential expressed miRNA | Differentially expressed gene | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| miRNA | Log2(FC) | P value | Expression | Inhibition | Predicted target gene | FDR# P value* | Log2(FC) | Expression | Predicted gene function |
| miR156v | 12.5 | 0.02 | up | Cleavage | c32948.g_c0# N.11366* | 5E-04# 0.004* | −1.8# −1.4* | down | squamosa promoter-binding-like protein 6, transcription factor SPL6 |
| miR172f | 11.4 | 0.04 | up | Cleavage | c56968.g_c0# N.9090* | 3E-12# 0.002* | 2.4# 2.3* | up | AP2-like ethylene-responsive transcription factor TOE3 (AP2), binds to the GCC-box pathogenesis-related promoter element |
| miR172g | 11.4 | 0.04 | up | Cleavage | up | ||||
| miR408a | −11.1 | 0.03 | down | Translation | c23376.g_c0# N.38165 | 6E-112# 4E-06* | 2.1# 3.7* | up | a blue protein with copper ion binding function for electron transport |
Change was supported by transcript levels in both de novo assembling assay (#) and reference guided assembly assay (*). FDR represents false discovery rate. The predicted target gene marked by # or * are the same gene from corresponding assembly method.