Table 2.
Tagging algorithm. SNPs that were force included for FBXO11 were rs2134056, reported by Segade et al.21 and rs330787 by Rye et al.20.
| Locus | transcripts | Tagging algorithm configuration | Tagging results | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Region(NCBI 36 coordinates) | MAF | Population | r2 | SNPs force included | Number of tag SNPs | Alleles captured | Mean max r2 | ||
| EVI1* | 5 | 3:170282244..170349787 | >0.05 | CEU | >0.8 | — | 10 | 71/71 | 0.98 |
| FBXO11 | 11 | 2:47882565..47991318 | >0.05 | CEU | >0.8 | rs2134056, rs330787 | 17 | 44/44 | 0.96 |
| NISCH | 14 | 3:52452118..52496071 | >0.05 | CEU | >0.8 | — | 2 | 2/2 | 1 |
| TGIF1 | 22 | 18:3399072..3451404 | >0.05 | CEU | >0.8 | — | 24 | 41/41 | 0.979 |
*EVI1 is part of the MDS1/EVI1 cluster, renamed as MECOM by HUGO.