Table 1.
Features of Ophiocordyceps draft genomes.
| Property | O. kimflemingiae – USA (SC16a) | O. camponoti-rufipedis – Brazil (Map-16) | O. australis sensu lato – Brazil (Map-64) | O. australis sensu lato - Ghana (1348a) | O. subramanianii sensu lato – Ghana (1346) |
|---|---|---|---|---|---|
| Fold coverage | 130 | 29 | 135 | 20 | 19 |
| Scaffolds in assembly | 2537 | 2206 | 594 | 2297 | 3401 |
| Total assembly length (Mbp) | 23.92 | 21.91 | 23.32 | 22.19 | 32.31 |
| N50 (kb) | 27 | 22 | 112 | 17 | 17 |
| Largest scaffold (kb) | 167 | 147 | 428 | 118 | 139 |
| Assembly GC content (%) | 55.92 | 56.1 | 53.13 | 53.48 | 60.35 |
| Transcript GC content (%) | 59.84 | 60.57 | 56.74 | 56.98 | 64.43 |
| Assembly gaps (%) | 0.75 | 0.01 | 0.4 | 0.55 | 0.38 |
| Repetitive content (%) | 6.83 | 6.59 | 2.87 | 2.45 | 4.06 |
| Genes | 8629 | 7621 | 8174 | 7995 | 11275 |
| Gene length (median) | 1294 | 1350 | 1363 | 1313 | 1039 |
| Transcript length (median) | 1152 | 1200 | 1227 | 1182 | 900 |
| Exon length (median) | 220 | 273 | 268 | 290 | 266 |
| CDS length (median) | 1149 | 1200 | 1227 | 1182 | 900 |
| Protein length (median) | 383 | 400 | 409 | 394 | 300 |
| Spliced genes (total, %) | 6871 (79.63%) | 5777 (75.8%) | 6258 (76.56%) | 5952 (74.45%) | 7705 (68.34%) |
| Exons per gene (median) | 3 | 2 | 2 | 2 | 2 |
| Intron length (median) | 62 | 60 | 64 | 65 | 71 |
| Introns per spliced gene (median) | 2 | 2 | 2 | 2 | 2 |
| Gene density (genes/Mbp) | 360.69 | 347.89 | 350.45 | 360.3 | 348.92 |
| Unique PFAM domains | 3499 | 3396 | 3542 | 3482 | 3446 |
| Genes with PFAM (total, %) | 5749 (66.62%) | 5359 (70.32%) | 5949 (72.78%) | 5746 (71.87%) | 6379 (56.58%) |
| Genes with GO (total, %) | 3981 (46.14%) | 3765 (49.4%) | 4143 (50.69%) | 4000 (50.03%) | 4387 (38.91%) |
| Genes with signalP (total, %) | 914 (10.59%) | 840 (11.02%) | 802 (9.81%) | 681 (8.52%) | 1064 (9.44%) |
| Genes with TMHMM (total, %) | 1536 (17.8%) | 1391 (18.25%) | 1537 (18.8%) | 1469 (18.37%) | 1752 (15.54%) |
| CEGMA completeness (%) | 99.13 | 98.69 | 99.13 | 98.25 | 98.47 |
| BUSCO complete or fragmented (%) | 97.6 | 93.6 | 98.2 | 95.9 | 89.6 |