Table 3.
Differentially expressed genes identified in developing wheat seeds at 30 days post anthesis of wheat genotypes with a high flour yield on milling. Transcriptome data from developing seeds at 30 days post anthesis of 13 poor milling and 19 high milling wheat genotypes obtained by next generation sequencing was subjected to RNA-Seq analysis followed by application of the Baggerley’s test to identify statistically significant differences in gene expression. The list of candidate genes shown are at FDR corrected P value of < 0.01 and sorted based on weighted proportion difference.
| Feature ID | Experiment - Fold Change (original values) | Baggerley’s test: Weighted proportions difference | Baggerley’s test: FDR p-value correction | Annotations |
|---|---|---|---|---|
| GH726097 | −26.11 | −1.94E-05 | 7.59E-10 | WHEAT Fasciclin FLA8 OS = Triticum aestivum |
| TC379245 | −4.55 | −1.38E-05 | 5.47E-04 | WHEAT Fasciclin FLA8 OS = Triticum aestivum |
| TC453372 | 30.34 | 3.35E-06 | 2.67E-03 | No BLAST hit |
| TC416783 | 2.75 | 9.91E-06 | 5.47E-04 | HORVD OS = Hordeum vulgare distichum |
| TC429180 | 4.53 | 2.13E-05 | 5.47E-04 | WHEAT Fasciclin FLA8 OS = Triticum aestivum |
| TC419869 | 9.21 | 2.75E-05 | 4.33E-05 | AEGTA Cell elongation DIMINUTO OS = Aegilops tauschii |
| CJ624986 | 45.34 | 3.87E-05 | 3.72E-04 | AEGTA 40 S ribosomal S9–2 OS = Aegilops tauschii |
| TC373342 | 9.29 | 4.08E-05 | 8.98E-04 | TRIUA Uncharacterized protein OS = Triticum urartu |