TABLE 4.

VZV-DEN09 average transcripts per million mapped reads compared to HSV-1

ORF	TPMa (avg)	TPM (SD)	Rank	HSV-1 homologue	ORF	Temporal classb	Rank	Avg rank	Functional class	ORF	Rank	Avg rank
0	6.946	1.389	32	None	70	IE	3	8.3	DNA replication	16	60	51.8
1	1.220	0.308	69	None	63	IE	4		DNA replication	28	55
2	2.563	0.343	57	None	4	IE	6		DNA replication	29	33
3	8.790	0.795	28	UL55	62	IE	9		DNA replication	36	40
4	22.000	2.256	6	UL54	71	IE	11		DNA replication	51	71
5	2.751	0.219	54	UL53	61	IE	17		Glycoproteins	5	54	33.0
6	1.417	0.057	67	UL52	48	E	14	47.7	Glycoproteins	14	74
7	2.922	0.359	53	UL1	59	E	24		Glycoproteins	31	22
8	3.755	0.453	46	UL50	29	E	33		Glycoproteins	37	37
9A	6.529	0.576	35	UL49.5	18	E	36		Glycoproteins	50	23
9	42.232	2.692	1	UL49	36	E	40		Glycoproteins	60	42
10	6.921	0.659	34	UL48	19	E	41		Glycoproteins	67	7
11	16.528	2.434	10	UL47	8	E	46		Glycoproteins	68	5
12	3.847	0.569	44	UL4	28	E	55		Nucleocapsid	21	51	28.2
13	8.310	0.891	30	None	16	E	60		Nucleocapsid	23	19
14	0.321	0.039	74	UL44	52	E	66		Nucleocapsid	33	16
15	3.426	0.070	49	UL43	6	E	67		Nucleocapsid	40	27
16	1.977	0.241	60	UL42	55	E	68		Regulate transcription	4	6	8.3
17	2.457	0.104	58	UL41	51	E	71		Regulate transcription	61	17
18	6.390	0.545	36	UL40	9	L	1	38.4	Regulate transcription	62	9
19	4.806	0.383	41	UL39	49	L	2		Regulate transcription	63	4
20	8.588	0.669	29	UL38	68	L	5		Regulate transcription	70	3
21	3.234	0.320	51	UL37	67	L	7		Regulate transcription	71	11
22	3.234	0.422	50	UL36	33.5	L	8			0	32
23	13.117	1.352	19	UL35	11	L	10			1	69
24	5.945	0.748	38	UL34	41	L	13			2	57
25	2.696	0.392	56	UL33	58	L	15			3	28
26	1.675	0.058	61	UL32	33	L	16			6	67
27	3.532	0.218	48	UL31	47	L	18			7	53
28	2.720	0.234	55	UL30	23	L	19			8	46
29	6.937	0.567	33	UL29	46	L	20			9A	35
30	1.674	0.200	62	UL28	31	L	22			9	1
31	11.910	0.666	22	UL27	50	L	23			10	34
32	12.010	1.344	21	None	64	L	25			11	10
33	13.614	1.374	16	UL26	69	L	26			12	44
33.5	18.037	2.056	8	UL26.5	40	L	27			13	30
34	4.319	0.427	43	UL25	3	L	28			15	49
35	1.660	0.254	65	UL24	20	L	29			17	58
36	5.406	0.308	40	UL23	44	L	31			18	36
37	6.330	0.326	37	UL22	10	L	34			19	41
38	5.626	0.242	39	UL21	9A	L	35			20	29
39	1.115	0.077	70	UL20	37	L	37			22	50
40	8.839	1.045	27	UL19	24	L	38			24	38
41	15.740	0.793	13	UL18	38	L	39			25	56
42	1.669	0.260	64	UL15	60	L	42			26	61
43	3.012	0.324	52	UL17	34	L	43			27	48
44	7.917	0.868	31	UL16	12	L	44			30	62
45	1.673	0.078	63	UL15	53	L	45			32	21
46	13.117	1.682	20	UL14	54	L	47			33.5	8
47	13.191	1.594	18	UL13	27	L	48			34	43
48	15.054	0.967	14	UL12	15	L	49			35	65
49	38.327	1.554	2	UL1	22	L	50			38	39
50	11.103	0.715	23	UL10	21	L	51			39	70
51	0.852	0.080	71	UL9	43	L	52			41	13
52	1.518	0.132	66	UL8	7	L	53			42	64
53	3.839	0.553	45	UL7	5	L	54			43	52
54	3.539	0.572	47	UL6	25	L	56			44	31
55	1.415	0.082	68	UL5	17	L	58			45	63
56	0.835	0.177	72	UL4	66	L	59			46	20
57	16.342	1.311	12	None	26	L	61			47	18
58	14.830	0.975	15	UL3	30	L	62			48	14
59	10.028	0.958	24	UL2	45	L	63			49	2
60	4.456	0.162	42	UL1	42	L	64			52	66
61	13.237	0.310	17	ICP0	35	L	65			53	45
62	16.548	3.813	9	ICP4	39	L	70			54	47
63	34.880	4.937	4	us1.5	56	L	72			55	68
64	9.462	2.572	25	us10	65	L	73			56	72
65	0.784	0.165	73	us9	14	L	74			57	12
66	2.160	0.190	59	us3	57	U	12	36.8		58	15
67	18.250	1.183	7	us7	32	U	21			59	24
68	31.449	1.539	5	us8	13	U	30			64	25
69	9.259	2.643	26	us10	0	U	32			65	73
70	35.131	4.209	3	us1.5	2	U	57			66	59
71	16.447	3.946	11	ICP4	1	U	69			69	26

^aTPM, transcripts per million reads.

^bIE, immediate early; E, early; L, late; U, unknown.