Table S2.

Summary of the Roche 454 and Illumina HiSeq and MiSeq data used for this study

Platform	Libraries	Total sequences, GB	No. of reads	Avg. read length, bp
454 GS FLX+	Shotgun	1.45	2,436,211	596
	8-kb paired end	0.53	1,374,104	387
HiSeq	400-bp paired end	2	20,000,000	100
MiSeq	800-bp paired end	2.9	13,321,492	220
	3-kb mate pair	0.72	5,115,846	141
	5-kb mate pair	0.59	4,068,052	145
	8-kb mate pair	0.51	3,489,420	147