Table 5.

Information of the detected QTL clusters for all investigated traits in different environments.

Category	Clouster	Treatment	Linkage group	Peak position (cM)	Confience interval (cM)	ADDa	QTL numbers included	sQTLs included
RM-specific QTL cluster	qcA01-1	LN	A01	44.92	43.05–46.8	−	2	sqTRN.A01
	qcA01-2	HN	A01	49.34	48.27–50.41	−	4	sqTRN.A01
	qcA02-3	LN	A02	67.41	65.19–69.64	+	2	–
	qcA05-1	LN	A05	28.13	27.98–28.27	−	2	–
	qcA07-1	HN	A07	62.8	62.46–63.15	+	4	sqTRL.A07-2
	qcA07-2	HN/LN	A07	65.2	64.83–65.58	+	3	–
	qcA07-3	HN/LN	A07	67.2	66.23–68.18	+	5	sqTRN.A07-1
	qcA07-4	HN	A07	71.4	70.46–72.34	+	3	sqTRL.A07-3/sqTSA.A07/sqTRV.A07-1/sqTRN.A07-2
	qcA07-5	HN/LN	A07	73.91	73.6–74.22	+	13	sqTRL.A07-3/sqTSA.A07/sqTRV.A07-1/sqTRN.A07-2/sqRDW.A07-1
	qcA09-2	LN	A09	101.94	99.07–104.81	+	5	sqTSA.A09/sqRDW.A09
NUE-specific QTL cluster	qcA01-3	LN	A01	88.96	88.02–89.91	−	3	sqSDW.A01
	qcA01-4	LN	A01	112.01	110.16–113.85	±	2	–
	qcA02-2	LN	A02	51.31	50.12–52.49	±	2	–
	qcA04	HN/LN	A04	79.84	79.15–80.52	+	6	sqSDW.A04/sqSNU.A04
	qcA05-2	LN	A05	36.15	35.5–36.81	±	2	–
	qcA06	LN	A06	149.18	146.88–151.48	+	2	–
RM-NUE QTL cluster	qcA02-1	HN/LN	A02	41.71	41.15–42.27	+	3	sqRSRD.A02
	qcA07-6	HN/LN	A07	90.65	90.12–91.18	−	5	sqTRV.A07-2
	qcA07-7	LN	A07	99.05	98.02–100.09	−	4	–
	qcA07-8	HN/LN	A07	106.31	104.77–107.84	–	5	sqRDW.A07-2
	qcA09-1	HN/LN	A09	33.71	28.96–38.45	+	4	sqPRL.A09-3
	qcC04	HN/LN	C04	69.66	69.37–69.94	±	2	–

^aPositive and negative values represented corresponding QTLs carried the favorable alleles from ZS11 and No. 73290, respectively.