Figure 2.

PREP predicted editing sites and graphical read distribution and editing in the ndhB transcript. (A) Venn diagram with confirmed RNA editing sites predicted by PREP in Arabidopsis, soybean and rice. Gene names followed by the position numbering of the editing site in the coding sequence are indicated. (B) Graphical representation of sRNA coverage and predicted editing sites in the ndhB gene; (S) editing sites identified by SNP analysis, (T) predicted editing site in another species that already has a thymine in the species, (^*) editing site predicted by PREP and confirmed by read mapping and coverage, (−) predicted sites with reads but not confirmed by editing and (0) predicted editing sites without read coverage.