Table 1.
CRISPR-cas systems in Bifidobacterium longum strains.
| B. longum | Strain | Type-subtype | Repeat sequence | Repeat length | No. repeats | cas1 | cas3 | cas9 |
|---|---|---|---|---|---|---|---|---|
| longum | 7 | I-C | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 159 | Y | Y | |
| 9 | I-C | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 159 | Y | Y | ||
| 379 | I-C | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 1 | Y | Y | ||
| 35624 | I-C | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 164 | Y | Y | ||
| 105-A | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 34 | Y | Y | ||
| 1-5B | None | None | ||||||
| 1-6B | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 7 | Y | Y | ||
| 2nd locus | I-E | GGTTTATCCCCGCGTGTGCGGGGTAGAT | 28 | 21 | Y | |||
| 17-1B | I-U | CTTGCATACGTCAAAACGTATGCACTTCATTGAGGA | 36 | 44 | Y | Y | ||
| 2-2B | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 8 | Y | Y | ||
| 2nd locus | I-E | ACCTACCCCGCAGGCGCGGGGATAAA | 26 | 11 | Y | |||
| 35B | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 12 | Y | Y | ||
| 44B | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 18 | Y | Y | ||
| 2nd locus | I-E | GGTTTATCCCCGCGTGTGCGGGGTAGAT | 28 | 25 | Y | |||
| 7-1B | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 34 | Y | Y | ||
| 72B | None | None | ||||||
| AH1206 | None | None | ||||||
| ATCC55813 | None | None | ||||||
| BBMN68 | I-E | GTTTGCCCCGCATGCGCGGGGATGATCCG + | 29 | 10 | Y | Y | ||
| GTTTGCCCCGCATGCGCGGGGATGATCCG + | 29 | 13 | ||||||
| GTTTGCCCCGCACGCGCGGGGATGATCCG | 29 | 7 | ||||||
| BG7 | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 34 | Y | Y | ||
| BLO12 | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 19 | Y | Y | ||
| BXY01 | None | None | ||||||
| CCUG30698 | None | None | ||||||
| CECT 7347 | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 38 | Y | Y | ||
| CMCC P0001 | None | None | ||||||
| CMW7750 | None | None | ||||||
| D2957 | None | None | ||||||
| DJO10A | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 43 | Y | Y | ||
| DSM 20219 | None | None | ||||||
| E18 | None | None | ||||||
| EK13 | None | None | ||||||
| EK5 | None | None | ||||||
| F8 | None | None | ||||||
| GT15 | None | None | ||||||
| JCM 1217 | None | None | ||||||
| JDM 301 | None | None | ||||||
| KACC 91563 | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 33 | Y | Y | ||
| LMG 13197 | None | None | ||||||
| LO-06 | None | None | ||||||
| LO-10 | None | None | ||||||
| LO-21 | None | None | ||||||
| LO-C29 | None | None | ||||||
| LO-K29a | None | None | ||||||
| LO-K29b | None | None | ||||||
| MC-42 | I-E | GTTTGCCCCGCATGCGCGGGGATGATCCG | 29 | 136 | Y | Y | ||
| NCC2705 | None | None | ||||||
| NCIMB8809 | None | None | ||||||
| VMKB44 | II-C | CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC | 36 | 52 | Y | Y | ||
| infantis | 157F | None | None | |||||
| ATCC 15697 | None | None | ||||||
| BIB1401242951 | None | None | ||||||
| BIB1401272845a | None | None | ||||||
| BIB1401272845b | None | None | ||||||
| BIC1206122787 | None | None | ||||||
| BIC1307292462 | None | None | ||||||
| BIC1401111250 | None | None | ||||||
| BIC1401212621a | None | None | ||||||
| BIC1401212621b | None | None | ||||||
| BT1 | I-C | GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT | 33 | 61 | Y | Y | ||
| CCUG 52486 | None | None | ||||||
| CECT 7210 | None | None | ||||||
| EK3 | I-E | GTTTGCCCCGCACGCGCGGGGATGATCCG | 29 | 69 | Y | Y | ||
| 2nd locus | I-C | GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT | 33 | 8 | Y | |||
| IN-07 | I-C | GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT | 33 | 61 | Y | Y | ||
| IN-F29 | I-C | GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT | 33 | 76 | Y | Y | ||
| TPY12-1 | None | None | ||||||
| suis | AGR2137 | I-E | GTTTGCCCCGCACGCGCGGGGATGATCCG | 29 | 21 | Y | Y | |
| 2nd locus | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 4 | |||||
| BSM11-5 | I-C | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 62 | Y | Y | ||
| DSM 20211 | Undet | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 9 | N | |||
| LMG 21814 | Undet | GTCGCACCCCACTGGGGTGCGTGGATTGAAAT | 32 | 9 | N |