Table 1.
strain type | source | n | infant | adult | CSFb | blood | sputa | otherc | NPd | OPe/saliva |
---|---|---|---|---|---|---|---|---|---|---|
non-pneumococcala | disease | 101 | n.a. | n.a. | 70 | 24 | 3 | 4 | — | — |
carriage | 103 | 52 | 51 | — | — | — | — | 53 | 50 | |
NTf pneumococci | carriage | 17 | 12 | 5 | — | — | — | — | 17 | — |
overall | 221 | 64 | 56 | 70 | 24 | 3 | 4 | 70 | 50 |
aStrains annotated based on sequence analysis of the ribosomal S2 gene.
bCerebrospinal fluid.
cWound, joint puncture, bronchoalveolar lavage fluid, unknown.
dNasopharynx.
eOropharynx.
fNT, non-typeable (presumably acapsular) pneumococci.