Table 5.
Number of genes associated with general COG functional categories
| Code | Value | % of total | Description |
|---|---|---|---|
| J | 219 | 6.30% | Translation, ribosomal structure and biogenesis |
| A | 0 | 0.00% | RNA processing and modification |
| K | 343 | 9.87% | Transcription |
| L | 98 | 2.82% | Replication, recombination and repair |
| B | 1 | 0.03% | Chromatin structure and dynamics |
| D | 50 | 1.44% | Cell cycle control, Cell division, chromosome partitioning |
| V | 110 | 3.16% | Defense mechanisms |
| T | 194 | 5.58% | Signal transduction mechanisms |
| M | 179 | 5.15% | Cell wall/membrane biogenesis |
| N | 66 | 1.90% | Cell motility |
| U | 29 | 0.83% | Intracellular trafficking and secretion |
| O | 112 | 3.22% | Posttranslational modification, protein turnover, chaperones |
| C | 165 | 4.75% | Energy production and conversion |
| G | 368 | 10.59% | Carbohydrate transport and metabolism |
| E | 317 | 9.12% | Amino acid transport and metabolism |
| F | 103 | 2.96% | Nucleotide transport and metabolism |
| H | 186 | 5.35% | Coenzyme transport and metabolism |
| I | 127 | 3.65% | Lipid transport and metabolism |
| P | 213 | 6.13% | Inorganic ion transport and metabolism |
| Q | 102 | 2.93% | Secondary metabolites biosynthesis, transport and catabolism |
| R | 281 | 8.08% | General function prediction only |
| S | 186 | 5.35% | Function unknown |
| – | 1865 | 37.62% | Not in COGs |
The total is based on the total number of protein coding genes in the genome of 10.1601/nm.5116 10.1601/strainfinder?urlappend=%3Fid%3DNRRL+B-23460