Table 2.
Comb-p determined differentially methylated regions (DMR)
| Rank comb-p | Rank DMRcate | RefGene name | Location (GRCh37/hg19 assembly) | Minimum p value | Number of probes | Stouffer-Liptak-Kechris p value | Šidák corrected | CpG island |
|---|---|---|---|---|---|---|---|---|
| 1 | 624 | TP53INP1 | chr8:95962083–95962464 | 0 | 6 | 0 | 0 | yes |
| 2 | NA | PRSS50 | chr3:46759334–46759699 | 0 | 8 | 0 | 0 | yes |
| 3 | 3 | HOXC4 | chr12:54446278–54446577 | 0 | 6 | 0 | 0 | no |
| 4 | 169 | PKP3 | chr11:396685–397078 | 0 | 3 | 0 | 0 | yes |
| 5 | NA | ZNF764 | chr16:30572738–30573014 | 0 | 5 | 0 | 0 | yes |
| 6 | 2 | PPT2 | chr6:32120954–32121421 | 0 | 14 | 0 | 0 | no |
| 7 | 21 | GABBR1 | chr6:29595001–29595316 | 0 | 7 | 2.70E-07 | 0.07 | yes |
| 8 | 358 | PITPNM3 | chr17:6358362–6358600 | 0 | 4 | 2.88E-07 | 0.1 | yes |
| 9 | NA | ESRRG | chr1:217306589–-217306764 | 0.01 | 3 | 1.01E-06 | 0.39 | no |
| 10 | NA | HS3ST2 | chr16:22959593–22959820 | 0 | 2 | 0 | 1 | yes |
Both uncorrected (Stouffer-Liptak-Kechris) p values and p values corrected for multiple testing (Sidak) are shown, as well as the rank order of the DMR obtained using the DMRcate method