Adaptive Immune Response	Compartment	Definition
‘TγCognate’	Lung	Number of Mtb-specific Tγ cells present in the lung
‘TcytCognate’	Lung	Number of Mtb-specific Tcyt cells present in the lung
‘TgamRecruitedCognate’	Lung	Number of Mtb-specific Tγ cells recruited to the lung
‘TcytRecruitedCognate’	Lung	Number of Mtb-specific Tcyt cells recruited to the lung
‘DCellStimulated’	Lung	Number of Dendritic Cells that have been stimulated
‘DCellExitedLung’	Lung→lymphatics	Number of Dendritic Cells that have left the lung upon stimulation
‘DCellExitedLymphatics’	Lymphatics→LN	Number of Dendritic Cells that have left the lymphatics to enter the lymph node
‘BlN4C’	Blood	Concentration of Mtb-Specific Naïve CD4+ T cells
‘BlE4C’	Blood	Concentration of Mtb-Specific Effector CD4+ T cells
‘BlCM4C’	Blood	Concentration of Mtb-Specific Central Memory CD4+ T cells
‘BlEM4C’	Blood	Concentration of Mtb-Specific Effector Memory CD4+ T cells
‘BlN8C’	Blood	Concentration of Mtb-Specific Naïve CD8+ T cells
‘BlE8C’	Blood	Concentration of Mtb-Specific Effector CD8+ T cells
‘BlCM8C’	Blood	Concentration of Mtb-Specific Central Memory CD8+ T cells
‘BlEM8C’	Blood	Concentration of Mtb-Specific Effector Memory CD8+ T cells
‘APC’	Lymph node	Number of Dendritic Cells in the Lymph Node [LN]
‘LnN4C’	Lymph node	Number of Mtb-Specific Naïve CD4+ T cells
‘LnP4C’	Lymph node	Number of Mtb-Specific Precursor CD4+ T cells
‘LnE4C’	Lymph node	Number of Mtb-Specific Effector CD4+ T cells
‘LnCM4C’	Lymph node	Number of Mtb-Specific Central Memory CD4+ T cells
‘LnEM4C’	Lymph node	Number of Mtb-Specific Effector Memory CD4+ T cells
‘LnN8C’	Lymph node	Number of Mtb-Specific Naïve CD8+ T cells
‘LnP8C’	Lymph node	Number of Mtb-Specific Precursor CD8+ T cells
‘LnE8C’	Lymph node	Number of Mtb-Specific Effector CD8+ T cells
‘LnCM8C’	Lymph node	Number of Mtb-Specific Central Memory CD8+ T cells
‘LnEM8C’	Lymph node	Number of Mtb-Specific Effector Memory CD8+ T cells