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. 2017 Oct 4;14:191. doi: 10.1186/s12985-017-0850-1

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Recombination analysis. a Similarity plot generated by SIMPLOT software based on 462 nt of ORF2 sequence using B2/2005 as query sequence and representative parent sequence of genotypes PCV2d (red) and PCV2a (blue) (JX535296 and AY180397, respectively). A PCV1 isolate was used as outgroup (green). The analysis was performed with a window size of 100 nt and a step size of 20 nt. b BootScan analysis and potential breakpoints for B2/2005 predicted by RDP3 software