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. 2017 Oct 5;12(10):e0185911. doi: 10.1371/journal.pone.0185911

Table 3. Summary information for contigs longer than 1,500 bp that were found in the pooled samples and assigned to the Anelloviridae family.

The number and letter codes from the first column (Code) correspond to those in the blank bullets shown on some of the branches of the phylogenetic tree from Fig 3. Those without codes were placed directly on the tree, as they defined new branches.

Code Sample Contig ID Length (bp) Sequence Name % Identity Bootstrap
Male A contig_3809 2,798 TTV P19-3 92.8 100.0
D Male A contig_1199 1,512 TTV P13-4 69.3 68.0
10 Male A contig_7929 1,875 TCHN-D2/TTV 11 79.2 100.0
12 Female contig_1 1,548 TTV P1-3 92.4 100.0
11 Female contig_129 1,506 TTV S72 79.8 100.0
14 Female contig_16376 1,513 TTMDV MDJN47 68.3 91.9
Female contig_2757 2,142 TTMV 9 76.6 99.0
Female contig_4524 1,977 TTMDV MDJN97 72.1 100.0
1 Female contig_5911 1,500 TJN2/TTV19 88.9 100.0
A Female contig_626 1,503 TTMV 18 89.7 100.0
Female contig_6674 2,381 TTV S69 71.2 97.0
Female contig_818 2,264 TTV P1-3 95.1 99.0
7 Female contig_9035 2,243 JA4 94.0 100.0
4 Female contig_1475 1,899 TCHN-A 87.5 100.0
13 Female contig_1946 1,644 TTMDV1 71.6 100.0
2 Female contig_268 1,951 SENV-H 90.1 100.0
Female contig_311 2,086 TTMDV MDJN47 66.6 89.0
8 Female contig_6533 1,530 TTV10 83.3 100.0
Female contig_7650 1,730 TTV P9-6 69.6 51.0
17 AI+IMSP contig_1199 1,586 TTV S80 66.8 99.8
AI+IMSP contig_793 2,367 TTV 16 90.8 100.0
15 AI+IMSP contig_1013 1,687 TTMDV MDJN47 66.0 95.8
9 AI+IMSP contig_1709 1,832 TTV 10 85.7 100.0
18 AI+IMSP contig_2151 1,985 TTV S97 65.6 79.0
B HEV contig_118 1,781 TTMV Emory1 68.6 68.0
3 HEV contig_2837 1,845 TTV S45 86.6 100.0
HEV contig_125 2,303 TTV S57 70.1 100.0
C HEV contig_2 1,923 TTMV LY3 66.6 79.0
5 HEV contig_236 1,643 TTV TCHN-E 72.0 99.9
6 HEV contig_2366 1,514 TTV P19-3 93.8 100.0
16 HEV contig_506 2,046 TTMV 5 73.7 96.0
E HEV contig_66 1,904 TTV S66 71.9 49.0