Table 3. Linked variants.

Mutant Allele	#Nonsyn Genome	# Linked Chr	Location; bp Change	Gene	AA Change	LOD Score
Stature
dmh14	29	3	3:23104458 G/A X	col1a1a	G1144E	5.41
dmh13	26	2	3:23104092 G/A	col1a1a	G1093R	3.61
dmh29	303	17	12:3070126 C/T	col1a1b	G1123D	7.22
dmh15	17/12	1/2	19:41411721 G/A	col1a2	G882D	12
dmh27	27	3	8:21181959 G/T	col2a1a	G1174X	3.91
dmh28	22	6	8:21181691 G/A X	col2a1aa	G1141D	4.8
dmh21b	66	8	8:21303580 G/A X	itpr3	G2135D	8.4
dmh30b	10	5	8:21303580 G/A	itpr3	G2135D	1.5
dmh16	17	4	12:13080359 T/G X	cmn	M10R	5.11
dmh31	9	5	5:31610564 G/A X	myhz2	M543I	5.97
dmh4	10	3	24:39229412 T/A X	CU929145.1	I156L	3.61
Fin
dmh35	41	12	20:40820378 C/T X	cx43	G138D	3.01
dmh20	38	12	20:28348113 C/A X	dll4	H190N	8.4
dmh32	28	3	20:28350489 T/A X	dll4	C263X	7.22
dmh33	16	5	20:28352804 C/A X	dll4	Y449X	6.02
dmh34	32	17	20:28350403 A/T X	dll4	R235X	1.5
Dermal skeleton
dmh3c	—	—	9:56069237 G/T	edar	D409Y	14.8
dmh19	23	1	8:17607022 A/G X	prkcz	S113P	5.7
dmh18	49	N/A
dmh22	66	N/A
Pigment
dmh8	23	3	1:46725420 G/T X	cx41.8	N63K	4.82
dmh7	35	5	1:46725024 T/A X	cx41.8	R195S	4.52
dmh9	25	6	15:40379722 G/A	kcnj13	T128M	3.01
dmh1d	102	6	15:40373740 A/T	kcnj13	Y325X	N/D
dmh11	12	N/A

^aMutation in col2a1a was filtered out as a candidate due to a low Phred-scaled quality score of 5.46 of the alternative allele.

^bMutants are most likely clonal; N/A, for these mutants, no linkage was found at time of publication; N/D, not determined; X, linkage to predicted chromosomes was confirmed.

^cIdentified by candidate gene approach.

^dIdentified by whole exome sequencing of a homozygous mutant pool.