Table 1.
Alignment summary
| Sample | Total reads | Mapped reads | Unmapped reads |
|---|---|---|---|
| TCGA-A7-A0D9-DNA_NB | 142,860,012 | 136,174,786 | 6,685,226 |
| TCGA-A7-A0D9-DNA_NT | 158,844,243 | 155,372,460 | 3,471,783 |
| TCGA-A7-A0D9-DNA_TP | 138,383,452 | 136,764,896 | 1,618,556 |
| TCGA-A7-A0D9-RNA_NT | 141,376,864 | 134,152,483 | 7,224,381 |
| TCGA-A7-A0D9-RNA_TP | 149,200,610 | 141,630,167 | 7,570,443 |
| TCGA-BH-A0B3-DNA_NB | 211,311,809 | 209,315,407 | 1,996,402 |
| TCGA-BH-A0B3-DNA_NT | 170,360,878 | 165,875,755 | 4,485,123 |
| TCGA-BH-A0B3-DNA_TP | 159,731,541 | 158,253,223 | 1,478,318 |
| TCGA-BH-A0B3-RNA_NT | 164,452,329 | 156,498,369 | 7,953,960 |
| TCGA-BH-A0B3-RNA_TP | 164,079,925 | 155,833,920 | 8,246,005 |
| TCGA-BH-A0B8-DNA_NB | 171,951,966 | 170,021,858 | 1,930,108 |
| TCGA-BH-A0B8-DNA_NT | 143,464,049 | 140,389,068 | 3,074,981 |
| TCGA-BH-A0B8-DNA_TP | 216,218,230 | 213,713,105 | 2,505,125 |
| TCGA-BH-A0B8-RNA_NT | 152,562,120 | 143,571,886 | 8,990,234 |
| TCGA-BH-A0B8-RNA_TP | 128,002,634 | 122,243,065 | 5,759,569 |
| TCGA-BH-A0BJ-DNA_NB | 147,410,868 | 145,768,369 | 1,642,499 |
| TCGA-BH-A0BJ-DNA_NT | 162,172,150 | 158,678,527 | 3,493,623 |
| TCGA-BH-A0BJ-DNA_TP | 143,442,013 | 141,770,778 | 1,671,235 |
| TCGA-BH-A0BJ-RNA_NT | 138,807,984 | 131,847,427 | 6,960,557 |
| TCGA-BH-A0BJ-RNA_TP | 149,966,756 | 144,440,232 | 5,526,524 |
| TCGA-BH-A0BM-DNA_NB | 159,310,853 | 156,835,192 | 2,475,661 |
| TCGA-BH-A0BM-DNA_NT | 165,501,253 | 162,838,285 | 2,662,968 |
| TCGA-BH-A0BM-DNA_TP | 119,192,355 | 117,149,967 | 2,042,388 |
| TCGA-BH-A0BM-RNA_NT | 149,007,565 | 138,576,725 | 10,430,840 |
| TCGA-BH-A0BM-RNA_TP | 117,977,848 | 100,498,089 | 17,479,759 |
| TCGA-BH-A0C0-DNA_NB | 176,208,298 | 173,440,163 | 2,768,135 |
| TCGA-BH-A0C0-DNA_NT | 177,261,968 | 172,796,230 | 4,465,738 |
| TCGA-BH-A0C0-DNA_TP | 143,339,652 | 141,217,919 | 2,121,733 |
| TCGA-BH-A0C0-RNA_NT | 189,543,380 | 180,211,183 | 9,332,197 |
| TCGA-BH-A0C0-RNA_TP | 125,992,620 | 118,740,948 | 7,251,672 |
| TCGA-BH-A0DK-DNA_NB | 160,749,783 | 158,782,935 | 1,966,848 |
| TCGA-BH-A0DK-DNA_NT | 158,654,513 | 155,523,188 | 3,131,325 |
| TCGA-BH-A0DK-DNA_TP | 178,103,631 | 175,051,156 | 3,052,475 |
| TCGA-BH-A0DK-RNA_NT | 191,328,391 | 184,115,083 | 7,213,308 |
| TCGA-BH-A0DK-RNA_TP | 143,488,953 | 136,143,128 | 7,345,825 |
| TCGA-BH-A0DP-DNA_NB | 157,712,348 | 155,347,716 | 2,364,632 |
| TCGA-BH-A0DP-DNA_NT | 167,557,587 | 163,348,435 | 4,209,152 |
| TCGA-BH-A0DP-DNA_TP | 168,097,321 | 165,554,381 | 2,542,940 |
| TCGA-BH-A0DP-RNA_NT | 169,655,182 | 159,641,615 | 10,013,567 |
| TCGA-BH-A0DP-RNA_TP | 136,210,380 | 129,171,483 | 7,038,897 |
| TCGA-BH-A0E0-DNA_NB | 151,357,163 | 141,201,519 | 10,155,644 |
| TCGA-BH-A0E0-DNA_NT | 159,040,104 | 156,614,176 | 2,425,928 |
| TCGA-BH-A0E0-DNA_TP | 130,825,456 | 129,444,757 | 1,380,699 |
| TCGA-BH-A0E0-RNA_NT | 146,561,149 | 136,899,519 | 9,661,630 |
| TCGA-BH-A0E0-RNA_TP | 111,749,610 | 105,126,617 | 6,622,993 |
| TCGA-BH-A0H7-DNA_NB | 170,784,467 | 168,285,144 | 2,499,323 |
| TCGA-BH-A0H7-DNA_NT | 173,665,210 | 169,363,318 | 4,301,892 |
| TCGA-BH-A0H7-DNA_TP | 156,659,296 | 154,959,185 | 1,700,111 |
| TCGA-BH-A0H7-RNA_NT | 154,651,936 | 146,599,114 | 8,052,822 |
| TCGA-BH-A0H7-RNA_TP | 186,962,558 | 179,990,244 | 6,972,314 |