Table 3.
Upstream dinucleotide distribution
| Dinucleotide | DNA NB DNA NT | DNA NB DNA TP | DNA NT DNA TP | DNA NB RNA NT | DNA NB RNA TP | DNA NT RNA NT | DNA NT RNA TP | DNA TP RNA NT | DNA TP RNA TP | RNA NT RNA TP |
|---|---|---|---|---|---|---|---|---|---|---|
| CC | 9.37% | 9.45% | 9.33% | 10.05% | 10.29% | 9.84% | 10.07% | 10.00% | 10.17% | 10.33% |
| AA | 5.57% | 5.78% | 5.37% | 3.77% | 3.65% | 3.89% | 3.82% | 3.88% | 3.73% | 4.14% |
| CG | 6.54% | 7.71% | 7.04% | 10.51% | 11.27% | 10.11% | 10.39% | 10.16% | 10.69% | 9.03% |
| GC | 6.97% | 7.73% | 7.14% | 9.53% | 10.06% | 9.47% | 9.78% | 9.54% | 10.17% | 9.82% |
| TT | 5.29% | 4.60% | 5.11% | 3.41% | 3.21% | 3.57% | 3.43% | 3.47% | 3.32% | 3.99% |
| TA | 4.87% | 4.29% | 5.00% | 3.06% | 2.97% | 3.15% | 3.08% | 3.06% | 2.99% | 3.48% |
| AC | 6.24% | 7.32% | 6.58% | 7.52% | 7.33% | 7.49% | 7.26% | 7.69% | 7.31% | 8.11% |
| CA | 5.25% | 5.89% | 5.37% | 4.79% | 5.30% | 4.86% | 5.29% | 4.90% | 5.36% | 5.15% |
| TG | 6.20% | 5.25% | 6.15% | 5.54% | 5.22% | 5.72% | 5.34% | 5.52% | 5.26% | 5.02% |
| AT | 3.14% | 3.83% | 3.22% | 3.06% | 3.03% | 2.97% | 2.98% | 3.08% | 3.04% | 3.37% |
| TC | 6.14% | 6.83% | 6.26% | 6.57% | 6.86% | 6.44% | 6.78% | 6.47% | 6.84% | 7.10% |
| CT | 4.21% | 5.26% | 4.34% | 3.94% | 4.43% | 3.91% | 4.34% | 4.06% | 4.48% | 4.62% |
| GG | 15.93% | 10.01% | 14.95% | 13.14% | 11.31% | 13.42% | 12.41% | 12.94% | 11.34% | 10.51% |
| GA | 5.20% | 5.77% | 5.12% | 5.55% | 5.43% | 5.53% | 5.44% | 5.58% | 5.56% | 5.39% |
| AG | 5.09% | 5.62% | 5.04% | 5.34% | 5.34% | 5.42% | 5.33% | 5.41% | 5.40% | 5.23% |
| GT | 4.00% | 4.67% | 3.97% | 4.23% | 4.31% | 4.22% | 4.27% | 4.25% | 4.36% | 4.72% |