Table 1.
Frequency in Set |
||||||
---|---|---|---|---|---|---|
Pherotype | Secreted Peptide | Maela, Thailand N = 3016 | Atlanta, USA N = 121 | Mass., USA N = 616 | Rotterdam, The Netherlands N = 141 | All 4,089 Genomesa |
Csp-1 | EMRLSKFFRDFILQRKK | 0.736 | 0.702 | 0.643 | 0.634 | 0.720 |
Csp-1_Short | EMRLSKFFRDFIL | 0.029 | 0 | 0 | 0 | 0.021 |
Csp-2 | EMRISRIILDFLFLRKK | 0.213 | 0.24 | 0.333 | 0.324 | 0.235 |
Csp-4_R1 | EMRKMNEKSFNIFNFF—RRR | 0.005 | 0 | 0.003 | 0 | 0.004 |
Csp-4_R2 | EMRKMNEKSFNIFNFFNFF—RRR | 0.004 | 0.008 | 0.018 | 0.035 | 0.007 |
Csp-4_R3 | EMRKMNEKSFNIFNFFNFFNFFRRR | 0.005 | 0 | 0.002 | 0 | 0.004 |
Otherb | — | 0.007 | 0.017 | 0.002 | 0.007 | 0.007 |
None | — | 0.002 | 0.033 | 0 | 0 | 0.003 |
This includes genome sets of variable geographic origin, such as the set of available genomes in GenBank.
Other pherotypes each found in < 0.2% of genomes, as well as two genomes of both Csp-1 and Csp-2 pherotype.