Skip to main content
. 2015 Jun 16;2015:bav059. doi: 10.1093/database/bav059

Table 1.

Distribution of sequences in G4RNA database

Locations G4 validation a
Confirmed G4s Denied G4s Inconclusive results
Wild-type sequences 5′UTR 99 79 17 3
3′UTR 45 41 0 4
Exonic coding 12 10 2 0
Intronic 8 8 0 0
TERRA 1 1 0 0
Total 165 139 19 7
All sequences 5′UTR 218 108 106 4
3′UTR 72 45 23 4
Exonic 21 17 4 0
Intronic 12 9 2 1
Artificial 10 5 5 0
TERRA 1 1 0 0
Total 334 185 140 9
Techniques
Discrete tests Probing and SHAPE 167 87 80 0
Circular dichroism 136 92 44 0
Expression assay 115 58 54 3
Melting temperature 104 69 35 0
NMR 20 19 1 0
Native gel mobility 16 14 2 0
Other 20 13 7 0
Total 578 352 223 3

a G4 validation presents the outcome of experimental tests in three columns: Confirmed G4s / denied G4s / inconclusive results

UTR, Untranslated Region; TERRA, Telomeric Repeat-containing RNA; SHAPE, Selective 2'-Hydroxyl Acylation analyzed by Primer Extension; NMR, Nuclear Magnetic Resonance.