Table 1.
Locations |
G4 validation
a |
||||
---|---|---|---|---|---|
Confirmed G4s | Denied G4s | Inconclusive results | |||
Wild-type sequences | 5′UTR | 99 | 79 | 17 | 3 |
3′UTR | 45 | 41 | 0 | 4 | |
Exonic coding | 12 | 10 | 2 | 0 | |
Intronic | 8 | 8 | 0 | 0 | |
TERRA | 1 | 1 | 0 | 0 | |
Total | 165 | 139 | 19 | 7 | |
All sequences | 5′UTR | 218 | 108 | 106 | 4 |
3′UTR | 72 | 45 | 23 | 4 | |
Exonic | 21 | 17 | 4 | 0 | |
Intronic | 12 | 9 | 2 | 1 | |
Artificial | 10 | 5 | 5 | 0 | |
TERRA | 1 | 1 | 0 | 0 | |
Total | 334 | 185 | 140 | 9 | |
Techniques | |||||
Discrete tests | Probing and SHAPE | 167 | 87 | 80 | 0 |
Circular dichroism | 136 | 92 | 44 | 0 | |
Expression assay | 115 | 58 | 54 | 3 | |
Melting temperature | 104 | 69 | 35 | 0 | |
NMR | 20 | 19 | 1 | 0 | |
Native gel mobility | 16 | 14 | 2 | 0 | |
Other | 20 | 13 | 7 | 0 | |
Total | 578 | 352 | 223 | 3 |
a G4 validation presents the outcome of experimental tests in three columns: Confirmed G4s / denied G4s / inconclusive results
UTR, Untranslated Region; TERRA, Telomeric Repeat-containing RNA; SHAPE, Selective 2'-Hydroxyl Acylation analyzed by Primer Extension; NMR, Nuclear Magnetic Resonance.