Figure 2:

Overview of protein groups, sequence coverage, and peptide modifications. (A) Stack representation of designated protein groups with the mean contents of unique, razor, and non-unique peptides represented in blue, yellow, and red, respectively. (B) Sequence coverage of identified proteins was plotted as total protein sequence coverage against coverage of theoretically observable peptides (as determined by MaxQuant). (C) All identified peptides. (D) Identified peptide modifications with an annotated mass shift. (E) Submitted and identified MS spectra and uniquely identified amino acid sequences per sample. (F) Peptide and protein group identification confidence per sample. Colour coding corresponds to the experimental groups’ in Fig. 1C.