Table 5:
Statistics of the assembly with different parameters
| Assembler | Assembly size (bp) | Contig N50 (bp) | Scaffold N50 (bp) | K-mer (bp) | Gapcloser | Rabbit |
|---|---|---|---|---|---|---|
| SOAPdenovo2 | 854 390 781 | 900 | 3380 | 63 | No | No |
| SOAPdenovo2 | 543 175 156 | 1118 | 5946 | 37 | No | No |
| SOAPdenovo2 | 1 231 272 241 | 19 792 | 67 539 | 87 | Yes | No |
| SOAPdenovo2 | 796 221 798 | 25 301 | 104 917 | 87 | Yes | Yes |
| Platanus | 750 231 563 | 13 232 | 583 084 | 41 | No | No |
| Platanus | 809 870 271 | 7886 | 383 826 | 47 | No | No |
| Platanus | 752 607 346 | 54 782 | 584 190 | 41 | Yes | No |
| Platanus | 695 092 854 | 61 801 | 637 826 | 41 | Yes | Yes |