Table 7:
Transposable elements in the R. delavayi genome
| Repbase TE length | Protein TE length | De novo TE length | Combined TEs | ||
|---|---|---|---|---|---|
| Length | Percentage | ||||
| DNA | 7 882 501 | 7 328 645 | 69 812 249 | 77 776 557 | 11.19 |
| LINE | 4 811 976 | 12 454 813 | 31 065 638 | 36 834 088 | 5.30 |
| SINE | 125 792 | 0.00 | 869 547 | 991 785 | 0.14 |
| LTR | 34 884 681 | 52 469 776 | 257 040 066 | 260 532 496 | 37.48 |
| Other | 552 | 0.00 | 0.00 | 552 | 0.00 |
| Unknown | 0.00 | 0.00 | 4 565 754 | 4 565 754 | 0.67 |
| Total | 47 001 844 | 72 016 848 | 350 372 642 | 359 874 503 | 51.77 |
Repbase TEs means RepeatMask against Repbase; Protein TEs means RepeatProteinMask result against Repbase protein; De novo TEs means RepeatMask against the de novo library; Combined TEs means the combined result of the 3 steps.