Table 2.

Nonsynonymous Substitutions Having a Significant Imbalance of Allele Distribution in Chinese Domestic Pigs and Wild Boars

Chr	Position (bp)	ID	Ancestral Allele	Derived Allele	Variant	Gene	AFa in Domestic Pigs	AFa in Wild Boars	SIFT Predictionb
4	90338649	rs80957510	A	G	Missense	TBX19	0.96	0.07	Tolerated_low_confidence (0.06)
4	90338654	rs80905569	C	G	Missense	TBX19	0.96	0.07	Deleterious_low_confidence (0)
4	90338694	rs80825297	C	T	Missense	TBX19	0.97	0.07	Tolerated (0.1)
4	90338781	rs344983154	A	G	Missense	TBX19	0.96	0.06	Tolerated (0.58)
4	90338853	rs80866535	C	T	Missense	TBX19	0.97	0.15	Tolerated (0.34)
4	90354828	rs341417992	T	C	Missense and splice_region	TBX19	0.96	0.06	Tolerated (0.13)
4	90358483	rs80951600	T	C	Missense	TBX19	0.96	0.03	Deleterious (0.01)
4	90358576	rs343615016	T	C	Missense	TBX19	0.96	0.06	Deleterious (0.02)
4	90360139	rs346121845	T	G	Missense	TBX19	0.96	0.06	Deleterious (0)
4	90371704	rs320504853	C	T	Missense	TBX19	0.96	0.06	Tolerated (1)
9	95536780	rs345994568	C	A	Missense	AHR	0.95	0.16	Tolerated (1)
9	95537674	rs339939442	T	G	Missense	AHR	0.95	0.16	Tolerated_low_confidence (0.31)
9	95537932	rs324951230	C	T	Missense	AHR	0.95	0.16	Tolerated_low_confidence (1)
9	95540357	rs339238482	C	A	Missense	AHR	0.95	0.17	Tolerated_low_confidence (1)
8	55660954	rs339707100	C	A	Missense	MARCH1	0.90	0.23	Tolerated (0.46)

^aThe alternative allele frequency in wild boars and domestic pigs.

^bThe deleterious variants are better interpreted as function-altering here.