Table 1.
Differentially expressed genes (DEGs) between WT and ala6.
| Gene_id | FPKM_ala6 | FPKM_WT | padj | Gene name | Description |
|---|---|---|---|---|---|
| AT1G54280 | 11.32 | 0.14 | 0 | ALA6 | ATPase E1-E2 type family protein/haloacid dehalogenase-like hydrolase family protein |
| AT1G25560 | 14.21 | 85.50 | 6.81E-275 | TEM1 | AP2/B3 transcription factor family protein |
| AT1G68840 | 17.46 | 90.52 | 1.48E-253 | RAV2 | Related to ABI3/VP1 2 |
| AT5G21940 | 86.36 | 369.80 | 2.01E-233 | – | Function unknown |
| AT2G40000 | 31.13 | 205.38 | 2.60E-224 | HSPRO2 | Ortholog of sugar beet HS1 PRO-1 2 |
| AT1G23390 | 21.13 | 97.82 | 9.04E-222 | – | Kelch repeat-containing F-box family protein |
| AT1G80440 | 36.24 | 160.52 | 2.97E-208 | – | Galactose oxidase/kelch repeat superfamily protein |
| AT4G37610 | 17.23 | 90.47 | 1.18E-203 | BT5 | BTB and TAZ domain protein 5 |
| AT1G73120 | 11.68 | 80.61 | 4.41E-175 | – | |
| AT3G59940 | 62.83 | 225.29 | 1.64E-144 | KFB50 | Galactose oxidase/kelch repeat superfamily protein |
| AT5G60680 | 22.32 | 87.36 | 5.12E-140 | – | Protein of unknown function, DUF584 |
| AT3G46600 | 14.44 | 49.61 | 1.27E-138 | – | GRAS family transcription factor |
| AT5G19120 | 78.50 | 218.55 | 1.62E-134 | – | Eukaryotic aspartyl protease family protein |
| AT1G27730 | 11.42 | 59.58 | 1.85E-129 | STZ | Salt tolerance zinc finger |
| AT4G05070 | 71.27 | 250.05 | 1.05E-128 | – | Wound-responsive family protein |
| AT3G20340 | 12.07 | 63.50 | 1.56E-123 | – | |
| AT1G68520 | 87.40 | 219.95 | 1.10E-122 | BBX14 | B-box type zinc finger protein with CCT domain |
| AT2G40140 | 24.02 | 82.13 | 5.15E-118 | CZF1 | Zinc finger (CCCH-type) family protein |
| AT5G37260 | 25.25 | 79.14 | 1.41E-107 | CIR1 | MYB family transcription factor Circadian 1 |
| AT5G56550 | 11.66 | 80.83 | 1.35E-93 | OXS3 | Oxidative stress 3 |
| AT5G61160 | 24.42 | 62.07 | 1.91E-83 | AACT1 | Anthocyanin 5-aromatic acyl transferase 1 |
| AT5G24030 | 98.83 | 37.43 | 3.06E-83 | SLAH3 | SLAC1 homolog 3 |
| AT1G80920 | 90.37 | 253.72 | 1.09E-81 | J8 | Chaperone DnaJ-domain superfamily protein |
| AT2G23130 | 114.40 | 37.32 | 9.69E-74 | AGP17 | Arabinogalactan protein 17 |
| AT2G21210 | 13.92 | 47.65 | 4.39E-73 | – | SAUR-like auxin-responsive protein family |
| AT1G32920 | 57.06 | 142.22 | 1.48E-69 | – | |
| AT3G15450 | 149.28 | 423.60 | 1.58E-67 | – | Aluminum induced protein with YGL and LRDR motifs |
| AT3G15630 | 86.45 | 183.59 | 2.66E-66 | – | |
| AT5G67420 | 18.34 | 69.95 | 6.23E-66 | LBD37 | LOB domain-containing protein 37 |
| AT5G18670 | 4.21 | 14.83 | 1.75E-65 | BMY3 | Beta-amylase 3 |
Gene_id: Gene identity; FPKM: Fragments Per Kilobase of transcript per Million fragments mapped; padj: P-value by adjustment.