Table 2.
Differentially expressed splice variants of functionally annotated lncRNAs from HMECs following LPS treatment for 3 and 24 h.
| Functionally annotated lncRNAs | Total number of splice variants | Number of differentially expressed splice variants | Differentially expressed NONCODE splice variants | Class |
|---|---|---|---|---|
| ADAMTS9-AS2 | 11 | 2 | NONHSAT090266, NONHSAT090274 | Antisense |
|
| ||||
| AK082072 | 39 | 9 | NONHSAT102610, NONHSAT102619, NONHSAT102626 | LINC |
| NONHSAT102631, NONHSAT102632, NONHSAT102634 | ||||
| NONHSAT102637, NONHSAT102640, NONHSAT102641 | ||||
|
| ||||
| ANRIL | 20 | 8 | NONHSAT130413, NONHSAT130414, NONHSAT130416, | Antisense |
| NONHSAT130417, NONHSAT130422, NONHSAT130423, | ||||
| NONHSAT130425, NONHSAT130433 | ||||
|
| ||||
| CCAT1 | 16 | 1 | NONHSAT129019 | Antisense |
|
| ||||
| CDR1-AS | 5 | 1 | NONHSAT138820 | Antisense |
|
| ||||
| CRNDE | 13 | 2 | NONHSAT142619, NONHSAT142620 | LINC |
|
| ||||
| CTBP1-AS | 8 | 1 | NONHSAT094692 | LINC |
|
| ||||
| CYP4A22-AS1 | 2 | 2 | NONHSAT003050, NONHSAT003054 | Antisense |
|
| ||||
| Cyrano | 14 | 2 | NONHSAT041921, NONHSAT041926 | Antisense |
|
| ||||
| DHFR upstream transcripts | 1 | 1 | NONHSAT102417 | Antisense; exonic |
|
| ||||
| DHRS4-AS1 | 7 | 3 | NONHSAT035952, NONHSAT035953, NONHSAT035955 | Antisense |
|
| ||||
| DISC2 | 2 | 1 | NONHSAT010195 | Exonic |
|
| ||||
| DLEU1 | 48 | 6 | NONHSAT033809, NONHSAT033813, NONHSAT033815 | Antisense |
| NONHSAT033822, NONHSAT033823, NONHSAT033850 | ||||
|
| ||||
| DLEU2 | 24 | 8 | NONHSAT033771, NONHSAT033774, NONHSAT033780 | Antisense |
| NONHSAT033788, NONHSAT033796, NONHSAT033798 | ||||
| NONHSAT033800, NONHSAT033805 | ||||
|
| ||||
| EGO | 3 | 2 | NONHSAT087635, NONHSAT087634 | Antisense |
|
| ||||
| GAS5 | 33 | 3 | NONHSAT007665, NONHSAT007698, NONHSAT007698 | Antisense |
|
| ||||
| Gomafu | 52 | 6 | NONHSAT084541, NONHSAT084545, NONHSAT084547 | LINC |
| NONHSAT084548, NONHSAT084549, NONHSAT084551 | ||||
|
| ||||
| H19 | 17 | 10 | NONHSAT017460, NONHSAT017461, NONHSAT017461 | LINC |
| NONHSAT017465, NONHSAT017466, NONHSAT017467 | ||||
| NONHSAT017469, NONHSAT017471, NONHSAT017472, | ||||
| NONHSAT017474 | ||||
|
| ||||
| HOTAIRM1 | 5 | 4 | NONHSAT119664, NONHSAT119665, NONHSAT119666, | LINC |
| NONHSAT119667 | ||||
|
| ||||
| Hoxa11as | 9 | 1 | NONHSAT119711 | Antisense |
|
| ||||
| IPW | 81 | 22 | NONHSAT041066, NONHSAT040981, NONHSAT040985 | Antisense |
| NONHSAT040986, NONHSAT040988, NONHSAT040989 | ||||
| NONHSAT040990, NONHSAT040991, NONHSAT041000 | ||||
| NONHSAT041004, NONHSAT041006, NONHSAT041023 | ||||
| NONHSAT041028, NONHSAT041047, NONHSAT041054 | ||||
| NONHSAT041057, NONHSAT041060, NONHSAT041061 | ||||
| NONHSAT041062, NONHSAT041064, NONHSAT041065 | ||||
| NONHSAT041140 | ||||
|
| ||||
| Jpx | 14 | 3 | NONHSAT137572, NONHSAT137582, NONHSAT137583 | LINC |
|
| ||||
| LINC00568 | 2 | 1 | NONHSAT006301 | LINC |
|
| ||||
| LUCAT1 | 13 | 4 | NONHSAT102744, NONHSAT102748, NONHSAT102749 | LINC |
| NONHSAT102750 | ||||
|
| ||||
| linc00467 | 6 | 6 | NONHSAT009289, NONHSAT009290, NONHSAT009291 | LINC |
| NONHSAT009292, NONHSAT009293, NONHSAT009294 | ||||
|
| ||||
| lincRNA-SFMBT2 | 8 | 1 | NONHSAT011261 | LINC |
HMECs: human dermal microvascular endothelial cells; LINC: long intergenic noncoding RNA.