Table 2. Settings for Maximum Likelihood and Bayesian analyses for the concatenated mitochondrial dataset.

Software	Model & priorsa	Part schemeb	Iterations gen./bootstrap replicates	Sample freq	Runs/ chain	Burnin	ASDSFc	Bayes factor/ML scores (−lnL)d	ESS > 200e	PSRFf
RAXML	GTR +Γ	Unpart	1,000	n/a	n/a	n/a	n/a	−9006.5300	n/a	n/a
RAXML	GTR +Γ	Gene	1,000	n/a	n/a	n/a	n/a	−8865.7562	n/a	n/a
RAXML	GTR +Γ	BP	1,000	n/a	n/a	n/a	n/a	−8334.7701	n/a	n/a
Garli	012010 + Γ + F	Unpart	1,000	n/a	n/a	n/a	n/a	−8986.6239	n/a	n/a
Garli	Mixed model	Gene	1,000	n/a	n/a	n/a	n/a	−8972.0488	n/a	n/a
Garli	Mixed model	BP	1,000	n/a	n/a	n/a	n/a	−8212.4919	n/a	n/a
MrBayes	GTR +Γ	Unpart	2 × 108	5,000	4	25%	0.000724	−8959.8260	Yes	1
MrBayes	GTR +Γ	Gene	2 × 108	5,000	4	25%	0.001157	−8928.4492	Yes	1
MrBayes	GTR +Γ	BP	2 × 108	5,000	4	25%	0.001170	−8608.5042	Yes	1
Phycas	GTR +Γ	Unpart	1 × 106	50	n/a	25%	n/a	−8959.6281	Yes	n/a
Phycas	GTR +Γ	Gene	1× 106	50	n/a	25%	n/a	−8879.1040	Yes	n/a
Phycas	GTR +Γ	BP	1 × 106	50	n/a	25%	n/a	−8324.1730	Yes	n/a

Notes.

^aAll others default.

^bBP as indidcated by PartitionFinder (1, 16S +12S +Cytb 2nd codons; 2, COI 1st codons + Cytb 1st codons; 3, COI 2nd codons; 4, Cytb 3rd codons + COI 3rd codons).

^cAverage standard deviation of split frequencies.

^dEstimated in Tracer v.1.5.

^eEffective sample size.

^fPotential Scale Reduction Factor for all parameters.