Subject area |
Immunology and Molecular Biology |
More specific subject area |
Transcriptional elongation |
Type of data |
Figures and Images |
How data was acquired |
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quantitative PCR (qPCR) (Bio-Rad CFX96 Real-Time PCR Detection System and CFX96 Software)
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Reanalyzed publically available RNA-Seq experiment GSE70294
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Time lapse imaging (Evos Auto FL Cell Imaging System and Image Studio Software)
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Western blot (SDS-Page gel electrophoresis and wet transfer; Bio-Rad equipment and Bio-Rad clarity chemiluminescent detection)
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Data format |
Analyzed |
Experimental factors |
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RNA was extracted from untransduced cell line model cells and expression assessed
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RNA-Seq experiment was done on LPS treated primary murine B cells that were cell sorted by divisions and CD138 levels.
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Namalwa BL cell line transduced with control and two independent mCherry-tagged ELL3 specific shRNA's for five consecutive days
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Protein and mRNA was extracted from Namalwa BL cell line transduced with control and two independent mCherry-tagged ELL3 specific shRNA's for five consecutive days and expression assessed.
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Experimental features |
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Quantitative mRNA detection of ELL, ELL2 and ELL3 in B cell compartment cell line models
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Expression levels of ELL, ELL2 and ELL3 were extracted from the data set GSE70294 of RNA-Seq performed on each Cell Titer Violet and CD138-positive, populations following LPS stimulus of murine primary B cells.
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shRNA transduced Namalwa cells were imaged at day 6 post transduction every 5 min for 24 h.
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Western blot analysis of PRDM1 levels and detection of PRDM1, EBV lytic replication genes (BZLF1, BMRF and BLLF1), B cell factors (BCL6, PAX5, MYC) and plasma cell factor (membrane bound and secreted IgM) mRNA levels
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Data source location |
H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL, USA |
Data accessibility |
Data is within this article |