Table 1.
Relative fold change of the expression of selected tomato plant genes induced by viruliferous whiteflies carrying PepGMV (WF & V) or nonviruliferous whiteflies (WF), compared with nonwounded (NW) plants
| Gene classification | Gene name | NW | WF & V | WF |
|---|---|---|---|---|
| Defense-related annotation | ||||
| Acidic 26 kDa endochitinase precursor | SGN-U144297 | 1.00(a) | 2.90(b) | 1.10(a) |
| 1-Aminocyclopropane-1-carboxylate oxidase 1 (ACC oxidase 1) (Ethylene-forming) | SGN-U143274 | 1.00(a) | 2.75(b) | 2.74(b) |
| Arginase ( A. thaliana ) | SGN-U145219 | 1.00(a) | 6.01(b) | 1.69(b) |
| Aspartic protease inhibitor 1 precursor (pA1) (gCDI-A1) (STPIA) (STPID) | SGN-U143342 | 1.00(a) | 3.82(a) | −1.27(b) |
| Endochitinase 3 precursor | SGN-U143337 | 1.00(a) | 3.11(b) | 2.11(b) |
| PI2Cev1 precursor | SGN-U144127 | 1.00(a) | 6.91(b) | 1.60(a) |
| IAA-Ala hydrolase (IAR3) ( A. thaliana ) | SGN-U144992 | 1.00(a) | 3.07(b) | 3.89(b) |
| PPO F, chloroplast precursor (PPO) (Catechol oxidase) | SGN-U143365 | 1.00(a) | 3.51(b) | 1.14(a) |
| Subtilisin-like proteinase (EC 3.4.21.-) 4—tomato | SGN-U151318 | 1.00(a) | 3.06(b) | 2.01(a,b) |
| Syringolide-induced protein 19-1-5 ( Glycine max ) | SGN-U143593 | 1.00(a) | −1.14(a) | 3.26(b) |
| WIN1 precursor | SGN-U143552 | 1.00(a) | 7.56(b) | 1.45(a) |
| WIN2 precursor | SGN-U143329 | 1.00(a) | 7.24(b) | 1.04(a) |
| Wound-inducible carboxypeptidase ( Lycopersicon esculentum ) | SGN-U148185 | 1.00(a) | 2.38(b) | 1.31(a) |
| Pathogen-related annotation | ||||
| Avr9/Cf-9 rapidly elicited protein 216 ( Nicotiana tabacum ) | SGN-U152421 | 1.00(a) | 2.66(b) | −1.64(a) |
| Disease resistance protein BS2 ( Capsicum chacoense ) | SGN-U146088 | 1.00(a) | 3.22(b) | 4.27(b) |
| Glycine-rich protein ( Nicotiana glauca ) | SGN-U147446 | 1.00(a) | 2.99(b) | 1.55(c) |
| NP24 protein precursor (PR P23) (salt-induced protein) | SGN-U143414 | 1.00(a) | −1.55(b) | −1.10(a) |
| Pathogenesis-related leaf protein 4 precursor (P4) | SGN-U143238 | 1.00(a) | 3.59(b) | 1.08(a) |
| Pathogenesis-related leaf protein 6 precursor (P6) (ethylene-induced protein P1) | SGN-U143242 | 1.00(a) | 3.21(b) | 1.30(a,b) |
| PR-1 precursor ( Capsicum annuum ) | SGN-U143838 | 1.00(a) | 3.24(b) | 1.05(a) |
| Pentatricopeptide (PPR) repeat-containing protein ( A. thaliana ) | SGN-U154133 | 1.00(a) | 2.03(b) | 1.58(c) |
| Probable glucosyltransferase twi1 (EC 2.4.1.-)—tomato (fragment) | SGN-U144770 | 1.00(a) | 2.34(b) | 1.60(a) |
| Probable GST (PR-1) | SGN-U143280 | 1.00(a) | 2.32(b) | 1.46(a) |
| Probable GST (PR-1) | SGN-U143286 | 1.00(a) | 1.86(b) | 1.02(a) |
| Pto-responsive gene 1 protein ( L. esculentum ) | SGN-U144888 | 1.00(a) | 3.54(b) | 2.02(b) |
| Putative leucine rich repeat containing protein kinase | SGN-U155709 | 1.00(a) | 1.30(a) | −2.40(b) |
| Photosynthesis-related annotation | ||||
| Chlorophyll a/b-binding protein type I precursor—tomato | SGN-U143178 | 1.00(a) | −1.76(b) | −1.20(a) |
| RuBisCO small chain 3, chloroplast precursor | SGN-U155531 | 1.00(a) | −1.54(b) | −1.17(a) |
| RuBisCO small chain 3A/3C, chloroplast precursor | SGN-U155534 | 1.00(a) | −1.48(b) | −1.02(a) |
| RuBisCO 3A/3C, chloroplast precursor | SGN-U155538 | 1.00(a) | −1.57(b) | −1.06(a) |
| Photosystem II protein I ( Physcomitrella patens subsp. patens ) | SGN-U152054 | 1.00(a) | −1.75(b) | 1.00(a) |
| Photosystem II 22 kDa protein, chloroplast precursor (CP22) | SGN-U143807 | 1.00(a) | −3.13(b) | −1.89(b) |
| Signaling-related annotation | ||||
| ARG1 protein ( A. thaliana) | SGN-U150408 | 1.00(a) | 8.24(b) | 1.31(a) |
| Calcium-dependent protein kinase ( Solanum tuberosum ) | SGN-U148281 | 1.00(a) | −1.18(a) | −2.03(b) |
| Calcium-dependent protein kinase ( S. tuberosum ) | SGN-U145308 | 1.00(a) | 4.62(b) | 2.65(b) |
| Casein kinase 2 catalytic subunit ( N. tabacum ) | SGN-U144481 | 1.00(a) | 1.04(a) | 1.74(b) |
| Casein kinase I, putative ( A. thaliana ) | SGN-U147401 | 1.00(a) | 3.51(b) | 1.77(c) |
| Probable protein kinase—tomato | SGN-U147032 | 1.00(a) | −1.77(b) | −1.05(a) |
| Cell wall and growth annotation | ||||
| Elongation factor-1 alpha ( N. tabacum ) | SGN-U143402 | 1.00(a) | 1.17(a,b) | 1.97(b) |
| Expansin-like protein ( Quercus robur ) | SGN-U146351 | 1.00(a) | 5.72(b) | 2.92(a,b) |
| Extensin class I (clone w1-8 L)—tomato (fragment) | SGN-U146403 | 1.00(a) | 1.85(b) | 1.17(a,b) |
| F-box protein FKF1/ADO3, AtFBX2a ( A. thaliana ) | SGN-U153437 | 1.00(a) | 2.59(b) | 1.77(b) |
| Inorganic pyrophosphatase ( N. tabacum ) | SGN-U144182 | 1.00(a) | 1.83(b) | 1.57(ab) |
| Putative auxin-repressed protein ( Prunus armeniaca ) | SGN-U144576 | 1.00(a) | 4.17(b) | 1.56(a,b) |
| XET (XTR4), putative ( A. thaliana ) | SGN-U143928 | 1.00(a) | 2.16(b) | 1.93(b) |
| Abiotic-related annotation | ||||
| Cold-induced glucosyl transferase ( Solanum sogarandinum ) | SGN-U143772 | 1.00(a) | 2.72(b) | 2.27(ab) |
| Dehydration-induced protein ERD15 ( L. esculentum ) | SGN-U144231 | 1.00(a) | 2.62(b) | 1.02(a) |
| Shock protein SRC2 family ( A. thaliana ) | SGN-U147611 | 1.00(a) | 3.87(b) | 1.56(a) |
For each gene, ratios with different letters indicate significant differences among treatments ( P ≤ 0.05). Gene ID is the Sol Genomics Network identifier.