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. 2017 Oct 10;17:666. doi: 10.1186/s12879-017-2760-7

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© The Author(s). 2017

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 2 — Core SNP tree, resistome, virulome and plasmid replicon analysis of 68 carbapenem-resistant K. pneumoniae strains. The maximum likelihood core SNP tree (left) was constructed by using K. pneumoniae 342 as reference genome. Major genetically distinct lineages are indicated by capital letters and branches labelled in different colours on the basis of the MLST type. The resistome, virulome and plasmid replicon analysis boxes (right) show the presence (grey) or absence (white) of the relevant genes for each of the isolates