Table 5.
Characteristics of whole genome datasets of different 10.1601/nm.3093 strains
| Strain name | Phylo group | Origina | Plasmid(s) | Genome size (bp) [chromosome + plasmid(s)] | G + C ratio (%) | CDS (nb) | Protein coding regions (nb) | rRNA operons (nb)b | tRNA genes (nb) |
|---|---|---|---|---|---|---|---|---|---|
| BG1 | B1 | Bc | 0 | 4,782,107 | 50.7 | 4562 | 4465 | 8 | 86 |
| K71 | B1 | Bc | 0 | 5,115,070 | 50.7 | 5178 | 4872 | 4 | 65 |
| W26 | B1 | Bc | 0 | 5,118,532 | 50.6 | 4925 | 4852 | 4 | 66 |
| Nissle 1917 | B2 | Hc | 0 | 5,441,200 | 50.6 | 5417 | 4970 | 10 | 121 |
| SE15 | B2 | Hc | 1 | 4,839,683 [4,717,338 + 122,345] | 50.7 | 4763 | 4572 | 7 | 85 |
| NCTC86 | A | Hc | 0 | 5,111,920 | 50.6 | 5243 | 4934 | 7 | 87 |
| VL2732 | A | Bp | 0 | 4,664,032 | 50.6 | 4615 | 4363 | 4 | 71 |
| Sakai | E | Hp | 2 | 5,594,477 [5,498,450 + 92,721 + 3306] | 50.5 | 5447 | 5324 | 7 | 103 |
| NCTC9001T | B2 | Hp | 0 | 5,038,133 | 50.6 | 5154 | 4859 | 6 | 62 |
aB: bovine; H: human; c: commensal; p: pathogen
bMinimal number of rRNA operons based on Prokka (BG1) or Genbank (K71, W26, VL2732, 10.1601/strainfinder?urlappend=%3Fid%3DNCTC+86, 10.1601/strainfinder?urlappend=%3Fid%3DNCTC+9001 T) annotation or on rrnDB (version 5.1) information [69]