Table 1.
Main characteristics of the 45 satDNA families found in the genome of A. paranae by RepeatExplorer and satMiner analyses.
| SF | SatDNA family | RUL | A+T (%) | V | Divergence (%) | Abundance (%) | Log2 (1B/0B) | ||
|---|---|---|---|---|---|---|---|---|---|
| 0B | 1B | 0B | 1B | ||||||
| ApaSat01-51 | 51 | 54.9 | 8 | 5.69 | 5.53 | 6.306 | 4.697 | −0.42 | |
| 1 | ApaSat02-236 | 236 | 64.8 | 1 | 14.99 | 15.16 | 0.448 | 0.371 | −0.27 |
| ApaSat03-91 | 91 | 51.6 | 5 | 4.96 | 4.9 | 0.23 | 0.185 | −0.32 | |
| 1 | ApaSat04-233 | 233 | 63.1 | 1 | 17.43 | 17 | 0.166 | 0.138 | −0.27 |
| ApaSat05-23 | 23 | 52.2 | 2 | 6.61 | 6.47 | 0.165 | 0.076 | −1.11 | |
| ApaSat06-86 | 86 | 46.4 | 1 | 4.95 | 4.62 | 0.084 | 0.157 | 0.91 | |
| ApaSat07-6-tel | 6 | 50.0 | 1 | 9 | 7.86 | 0.067 | 0.095 | 0.51 | |
| ApaSat08-35 | 35 | 62.9 | 3 | 6.15 | 6.33 | 0.066 | 0.043 | −0.60 | |
| ApaSat09-21 | 21 | 75.0 | 2 | 14.88 | 14.66 | 0.06 | 0.053 | −0.18 | |
| ApaSat10-179 | 179 | 63.1 | 1 | 4.02 | 3.95 | 0.053 | 0.05 | −0.10 | |
| ApaSat11-22 | 22 | 50.0 | 1 | 11.36 | 10 | 0.053 | 0.048 | −0.13 | |
| ApaSat12-69 | 69 | 60.9 | 1 | 3.5 | 3.61 | 0.052 | 0.05 | −0.06 | |
| ApaSat13-22 | 22 | 56.5 | 3 | 10.6 | 9.59 | 0.049 | 0.007 | −2.86 | |
| ApaSat14-184 | 184 | 63.0 | 2 | 11.78 | 11.69 | 0.045 | 0.054 | 0.25 | |
| ApaSat15-51 | 51 | 54.9 | 2 | 6.41 | 6.34 | 0.043 | 0.037 | −0.21 | |
| ApaSat16-54 | 54 | 48.1 | 2 | 9.4 | 9.26 | 0.042 | 0.046 | 0.14 | |
| ApaSat17-365 | 365 | 51.8 | 1 | 2.24 | 2.18 | 0.04 | 0.046 | 0.20 | |
| ApaSat18-58 | 58 | 46.6 | 2 | 6.95 | 7.65 | 0.034 | 0.033 | −0.04 | |
| ApaSat19-77 | 77 | 66.2 | 1 | 5.15 | 4.88 | 0.034 | 0.043 | 0.32 | |
| ApaSat20-18 | 18 | 50.0 | 1 | 12.04 | 8.08 | 0.033 | 0.181 | 2.43 | |
| ApaSat21-68 | 68 | 48.5 | 1 | 1.7 | 1.65 | 0.023 | 0.009 | −1.28 | |
| ApaSat22-63 | 63 | 56.5 | 1 | 16.48 | 16.19 | 0.021 | 0.026 | 0.32 | |
| ApaSat23-37 | 37 | 43.2 | 1 | 3.75 | 3.95 | 0.02 | 0.006 | −1.68 | |
| ApaSat24-78 | 78 | 56.4 | 1 | 5.73 | 5.77 | 0.019 | 0.013 | −0.49 | |
| ApaSat25-27 | 27 | 51.9 | 1 | 10.93 | 10.33 | 0.018 | 0.021 | 0.27 | |
| ApaSat26-195 | 195 | 65.1 | 1 | 8.24 | 9.67 | 0.017 | 0.012 | −0.51 | |
| ApaSat27-178 | 178 | 39.9 | 1 | 7.21 | 7.66 | 0.016 | 0.014 | −0.17 | |
| ApaSat28-52 | 52 | 55.8 | 1 | 16.19 | 16.11 | 0.015 | 0.017 | 0.16 | |
| ApaSat29-52 | 52 | 67.3 | 1 | 13.15 | 13.11 | 0.015 | 0.014 | −0.10 | |
| ApaSat30-50 | 50 | 64.0 | 1 | 15.45 | 14.47 | 0.015 | 0.014 | −0.04 | |
| ApaSat31-165 | 165 | 63.0 | 1 | 9.34 | 9.62 | 0.014 | 0.011 | −0.31 | |
| ApaSat32-85 | 85 | 58.8 | 1 | 6.86 | 16.12 | 0.013 | 0.001 | −4.63 | |
| ApaSat33-112 | 112 | 64.3 | 1 | 4.83 | 3.97 | 0.013 | 0.023 | 0.85 | |
| ApaSat34-59 | 59 | 37.3 | 1 | 1.48 | 1.44 | 0.012 | 0.104 | 3.07 | |
| ApaSat35-37 | 37 | 48.6 | 1 | 4.63 | 4.82 | 0.012 | 0.009 | −0.42 | |
| ApaSat36-21 | 21 | 57.1 | 1 | 6.32 | 6.87 | 0.011 | 0.01 | −0.24 | |
| ApaSat37-38 | 38 | 57.9 | 2 | 5.01 | 4.76 | 0.011 | 0.01 | −0.06 | |
| ApaSat38-107 | 107 | 41.1 | 1 | 17.94 | 15.1 | 0.011 | 0.018 | 0.79 | |
| ApaSat39-32 | 32 | 50.0 | 1 | 7.32 | 12.1 | 0.01 | 0.001 | −4.00 | |
| ApaSat40-189 | 189 | 65.6 | 1 | 9.63 | 7.7 | 0.009 | 0.027 | 1.53 | |
| ApaSat41-33 | 33 | 30.3 | 1 | 10.07 | 9.5 | 0.008 | 0.011 | 0.41 | |
| ApaSat42-90 | 90 | 66.7 | 1 | 4.76 | 4.67 | 0.006 | 0.006 | −0.06 | |
| ApaSat43-61 | 61 | 68.9 | 1 | 10.15 | 7.67 | 0.006 | 0.015 | 1.37 | |
| ApaSat44-21 | 21 | 38.1 | 1 | 25.92 | 5.43 | 0.002 | 0.041 | 4.34 | |
| ApaSat45-113 | 113 | 75.1 | 1 | 2.78 | 1.49 | 0.001 | 0.007 | 2.41 | |
| Total | 67 | 8.39 | 6.853 |
SF = superfamily, RUL = repeat unit length, V = number of variants. In each family, length and A + T content are given for the most abundant variant. Divergence per family is expressed as percentage of Kimura divergence.