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. 2017 Oct 5;7:12726. doi: 10.1038/s41598-017-12939-7

Table 1.

Main characteristics of the 45 satDNA families found in the genome of A. paranae by RepeatExplorer and satMiner analyses.

SF SatDNA family RUL A+T (%) V Divergence (%) Abundance (%) Log2 (1B/0B)
0B 1B 0B 1B
ApaSat01-51 51 54.9 8 5.69 5.53 6.306 4.697 −0.42
1 ApaSat02-236 236 64.8 1 14.99 15.16 0.448 0.371 −0.27
ApaSat03-91 91 51.6 5 4.96 4.9 0.23 0.185 −0.32
1 ApaSat04-233 233 63.1 1 17.43 17 0.166 0.138 −0.27
ApaSat05-23 23 52.2 2 6.61 6.47 0.165 0.076 −1.11
ApaSat06-86 86 46.4 1 4.95 4.62 0.084 0.157 0.91
ApaSat07-6-tel 6 50.0 1 9 7.86 0.067 0.095 0.51
ApaSat08-35 35 62.9 3 6.15 6.33 0.066 0.043 −0.60
ApaSat09-21 21 75.0 2 14.88 14.66 0.06 0.053 −0.18
ApaSat10-179 179 63.1 1 4.02 3.95 0.053 0.05 −0.10
ApaSat11-22 22 50.0 1 11.36 10 0.053 0.048 −0.13
ApaSat12-69 69 60.9 1 3.5 3.61 0.052 0.05 −0.06
ApaSat13-22 22 56.5 3 10.6 9.59 0.049 0.007 −2.86
ApaSat14-184 184 63.0 2 11.78 11.69 0.045 0.054 0.25
ApaSat15-51 51 54.9 2 6.41 6.34 0.043 0.037 −0.21
ApaSat16-54 54 48.1 2 9.4 9.26 0.042 0.046 0.14
ApaSat17-365 365 51.8 1 2.24 2.18 0.04 0.046 0.20
ApaSat18-58 58 46.6 2 6.95 7.65 0.034 0.033 −0.04
ApaSat19-77 77 66.2 1 5.15 4.88 0.034 0.043 0.32
ApaSat20-18 18 50.0 1 12.04 8.08 0.033 0.181 2.43
ApaSat21-68 68 48.5 1 1.7 1.65 0.023 0.009 −1.28
ApaSat22-63 63 56.5 1 16.48 16.19 0.021 0.026 0.32
ApaSat23-37 37 43.2 1 3.75 3.95 0.02 0.006 −1.68
ApaSat24-78 78 56.4 1 5.73 5.77 0.019 0.013 −0.49
ApaSat25-27 27 51.9 1 10.93 10.33 0.018 0.021 0.27
ApaSat26-195 195 65.1 1 8.24 9.67 0.017 0.012 −0.51
ApaSat27-178 178 39.9 1 7.21 7.66 0.016 0.014 −0.17
ApaSat28-52 52 55.8 1 16.19 16.11 0.015 0.017 0.16
ApaSat29-52 52 67.3 1 13.15 13.11 0.015 0.014 −0.10
ApaSat30-50 50 64.0 1 15.45 14.47 0.015 0.014 −0.04
ApaSat31-165 165 63.0 1 9.34 9.62 0.014 0.011 −0.31
ApaSat32-85 85 58.8 1 6.86 16.12 0.013 0.001 −4.63
ApaSat33-112 112 64.3 1 4.83 3.97 0.013 0.023 0.85
ApaSat34-59 59 37.3 1 1.48 1.44 0.012 0.104 3.07
ApaSat35-37 37 48.6 1 4.63 4.82 0.012 0.009 −0.42
ApaSat36-21 21 57.1 1 6.32 6.87 0.011 0.01 −0.24
ApaSat37-38 38 57.9 2 5.01 4.76 0.011 0.01 −0.06
ApaSat38-107 107 41.1 1 17.94 15.1 0.011 0.018 0.79
ApaSat39-32 32 50.0 1 7.32 12.1 0.01 0.001 −4.00
ApaSat40-189 189 65.6 1 9.63 7.7 0.009 0.027 1.53
ApaSat41-33 33 30.3 1 10.07 9.5 0.008 0.011 0.41
ApaSat42-90 90 66.7 1 4.76 4.67 0.006 0.006 −0.06
ApaSat43-61 61 68.9 1 10.15 7.67 0.006 0.015 1.37
ApaSat44-21 21 38.1 1 25.92 5.43 0.002 0.041 4.34
ApaSat45-113 113 75.1 1 2.78 1.49 0.001 0.007 2.41
Total 67 8.39 6.853

SF = superfamily, RUL = repeat unit length, V = number of variants. In each family, length and A + T content are given for the most abundant variant. Divergence per family is expressed as percentage of Kimura divergence.