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. 2017 Sep;5(18):379. doi: 10.21037/atm.2017.07.10

Table 1. Comparison between main types of ctDNA analyses (10).

Testing platform Advantages Disadvantages
PCR based platforms (for example: ARMS; BEAMing, ddPCR) (I) Quick turnaround time;
(II) high sensitivity and specificity;
(III) relatively cheaper
(I) Can only detect a small number of known relevant mutations;
(II) harder to detect copy number variations and gene fusions
NGS based platforms (for example: Tam-Seq, Ampli-Seq, CAPP-Seq, WES, WGS) (I) Can detect a large number of mutations without limiting sequencing space;
(II) easier to detect copy number variations and gene fusions
(I) Longer turnaround time; (II) expensive;
(III) bioinformatics required to analyze results

PCR, polymerase chain reaction; NGS, next-generation sequencing; ARMS, amplification refractory mutation system; BEAMing, beads, emulsion, amplification, magnetics; CAPP-Seq, cancer personalized profiling by deep sequencing; ddPCR, droplet digital PCR; Tam-Seq, tagged-amplicon deep sequencing; WES, whole-exome sequencing; WGS, whole-genome sequencing; ctDNA, circulating tumor DNA.