Table 1.
Quality and composition of lepidoptera genomes.
| Feature | Aly | Pra | Cce | Lac | Pgl | Dpl | Hme | Mci | Bmo | Pxy | Mse | Ppo | Pse | Pxu |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Genome size (Mb) | 567 | 246 | 729 | 298 | 375 | 249 | 274 | 390 | 481 | 394 | 419 | 227 | 406 | 244 |
| Genome size without gap (Mb) | 536 | 243 | 689 | 290 | 361 | 242 | 270 | 361 | 432 | 387 | 400 | 218 | 347 | 238 |
| Heterozygosity (%) | 1.5 | 1.5 | 1.2 | 1.5 | 2.3 | 0.55 | n.a. | n.a. | n.a. | ~2 | n.a. | n.a. | 1.2 | n.a. |
| Scaffold N50 (kb) | 558 | 617 | 233 | 525 | 231 | 716 | 194 | 119 | 3999 | 734 | 664 | 3672 | 257 | 6199 |
| CEGMA (%) | 99.6 | 99.6 | 100 | 99.3 | 99.6 | 99.6 | 98.2 | 98.9 | 99.6 | 98.7 | 99.8 | 99.3 | 99.3 | 99.6 |
| CEGMA coverage by single scaffold (%) | 87.1 | 88.7 | 85.3 | 86.6 | 86.9 | 87.4 | 86.5 | 79.2 | 86.8 | 84.1 | 86.4 | 85.8 | 87.4 | 88.8 |
| Cytoplasmic Ribosomal Proteins (%) | 98.9 | 98.9 | 98.9 | 98.9 | 98.9 | 98.9 | 94.6 | 94.6 | 98.9 | 93.5 | 98.9 | 98.9 | 98.9 | 97.8 |
| De novo assembled transcripts (%) | 98 | 99 | 97 | 98 | 98 | 96 | n.a. | 97 | 98 | 83 | n.a. | n.a. | 97 | n.a. |
| GC content (%) | 35.3 | 32.7 | 37.1 | 34.4 | 35.4 | 31.6 | 32.8 | 32.6 | 37.7 | 38.3 | 35.3 | 34.0 | 39.0 | 33.8 |
| Repeat (%) | 25.0 | 22.7 | 34 | 15.5 | 22.0 | 16.3 | 24.9 | 28.0 | 44.1 | 34.0 | 24.9 | n.a. | 17.2 | n.a. |
| Exon (%) | 3.57 | 7.91 | 3.11 | 6.96 | 5.07 | 8.40 | 6.38 | 6.36 | 4.03 | 6.35 | 5.34 | 5.11 | 6.20 | 8.59 |
| Intron (%) | 28.4 | 33.3 | 24 | 31.6 | 25.6 | 28.1 | 25.4 | 30.7 | 15.9 | 30.7 | 38.3 | 24.8 | 25.5 | 45.5 |
| Number of proteins (thousands) | 15.9 | 13.2 | 16.5 | 17.4 | 15.7 | 15.1 | 12.8 | 16.7 | 14.3 | 18.1 | 15.6 | 15.7 | 16.5 | 13.1 |
n.a. Data not available
Aly: Achalarus lyciades; Pra: Pieris rapae; Cce: Calycopis cecrops; Lac: Lerema accius; Pgl: Pterourus glaucus; Dpl: Danaus plexippus; Hme: Heliconius melpomene; Mci: Melitaea cinxia; Bmo: Bombyx mori; Pxy: Plutella xylostella; Mse: Manduca sexta; Ppo: Papilio polytes; Pse: Phoebis sennae; Pxu: Papilio xuthus.