Table 2.
Gene expression profiling by edgeR
| P < 0.05 | P < 0.01 | P < 0.001 | ||
|---|---|---|---|---|
| FA vs FB | FA UP: | 1992 | 1129 | 620 |
| FB UP: | 3068 | 1962 | 1207 | |
| Total: | 5060 | 3091 | 1827 | |
| FP vs FB | FP UP | 1752 | 731 | 268 |
| FB UP | 3445 | 1755 | 807 | |
| Total: | 5197 | 2486 | 1075 | |
| MH vs FB | MH UP | 2137 | 819 | 171 |
| FB UP | 2918 | 1768 | 1091 | |
| Total: | 5055 | 2587 | 1262 |
Table 2. Gene expression profiling by edgeR. Pairwise comparisons (FA vs FB, FP vs FB and MH vs FB) highlight genes upregulated in each sample according to different probability thresholds (P < 0.05, P < 0.01 and P < 0.001)