Table 1. Overview of the Aβ systems simulated.
System | # Filaments | # Layers a | Aβ residues | # H2O | # Atoms |
---|---|---|---|---|---|
AL3x∞ | 3 | ∞ | 1–40 | 24,488 | 95,100 |
AT3x∞ | 3 | ∞ | 9–40 | 16,503 | 66,897 |
AL3x12 | 3 | 12 | 1–40 | 38,302 | 136,542 |
AT3x12 | 3 | 12 | 9–40 | 20,053 | 77,547 |
AL3x6 | 3 | 6 | 1–40 | 33,395 | 111,003 |
AT3x6 | 3 | 6 | 9–40 | 14,903 | 53,403 |
AL3x3 | 3 | 3 | 1–40 | 23,577 | 76,140 |
AT3x3 | 3 | 3 | 9–40 | 13,137 | 43,758 |
a In the infinite fibril system, the periodic box contained 12 layers; see text for details