Table 2.
Predicted ORFs and genes in the PAXYB1 genome.
| ORF | Start | Stop | Direction | No. of residues | Mol. mass (kDa) | Calculated isoelectric point | Putative function |
|---|---|---|---|---|---|---|---|
| ORF1 | 727 | 960 | + | 77 | 8.3 | 6.08 | hypothetical protein |
| ORF2 | 942 | 1295 | + | 117 | 12.8 | 11.44 | hypothetical protein |
| ORF3 | 1779 | 2063 | + | 94 | 10.7 | 10.25 | hypothetical protein |
| ORF4 | 2063 | 2290 | + | 75 | 8.4 | 11.00 | hypothetical protein |
| ORF5 | 2301 | 2840 | + | 179 | 19.6 | 9.28 | hypothetical protein |
| ORF6 | 2903 | 3007 | + | 34 | 3.9 | 9.82 | hypothetical protein |
| ORF7 | 3010 | 3129 | + | 39 | 4.7 | 4.50 | hypothetical protein |
| ORF8 | 3208 | 3576 | + | 122 | 13.1 | 6.89 | hypothetical protein |
| ORF9 | 3563 | 3790 | + | 75 | 8.7 | 10.26 | hypothetical protein |
| ORF10 | 3787 | 3972 | + | 61 | 7.3 | 12.43 | hypothetical protein |
| ORF11 | 3969 | 4148 | + | 59 | 6.6 | 5.45 | hypothetical protein |
| ORF12 | 4148 | 4435 | + | 95 | 10.3 | 6.55 | hypothetical protein |
| ORF13 | 4432 | 4668 | + | 78 | 8.3 | 8.29 | hypothetical protein |
| ORF14 | 4684 | 4977 | + | 97 | 10.8 | 9.50 | hypothetical protein |
| ORF15 | 5056 | 5472 | + | 138 | 14.4 | 5.13 | hypothetical protein |
| ORF16 | 5541 | 5900 | + | 119 | 13.3 | 7.89 | hypothetical protein |
| ORF17 | 5849 | 6712 | + | 287 | 31.3 | 9.63 | putative DNA-binding protein |
| ORF18 | 6791 | 7210 | + | 139 | 15.7 | 4.98 | hypothetical protein |
| ORF19 | 6981 | 7520 | + | 179 | 20.0 | 5.88 | hypothetical protein |
| ORF20 | 7513 | 7638 | + | 41 | 4.2 | 5.75 | hypothetical protein |
| ORF21 | 7530 | 7733 | + | 67 | 7.8 | 9.76 | hypothetical protein |
| ORF22 | 7706 | 8530 | + | 274 | 31.0 | 8.91 | putative DNA primase |
| ORF23 | 8499 | 9767 | + | 422 | 47.4 | 5.38 | putative DNA helicase |
| ORF24 | 9757 | 10377 | + | 206 | 22.3 | 5.21 | hypothetical protein |
| ORF25 | 10377 | 11324 | + | 315 | 35.1 | 8.98 | ATP-dependent DNA ligase |
| ORF26 | 11321 | 11605 | + | 94 | 11.1 | 11.12 | hypothetical protein |
| ORF27 | 11602 | 11922 | + | 106 | 12.4 | 7.83 | hypothetical protein |
| ORF28 | 11919 | 14342 | + | 807 | 91.8 | 5.65 | putative DNA polymerase |
| ORF29 | 14339 | 14650 | + | 103 | 11.3 | 9.85 | hypothetical protein |
| ORF30 | 14705 | 15754 | + | 349 | 36.8 | 5.42 | hypothetical protein |
| ORF31 | 15754 | 16695 | + | 313 | 35.3 | 5.87 | 5′-3′ exonuclease |
| ORF32 | 16685 | 17125 | + | 146 | 16.4 | 9.67 | putative DNA endonuclease VII |
| ORF33 | 17122 | 18168 | + | 348 | 40.4 | 9.17 | hypothetical protein |
| ORF34 | 18178 | 18552 | + | 124 | 14.2 | 6.59 | hypothetical protein |
| ORF35 | 18542 | 18706 | + | 54 | 6.3 | 5.08 | hypothetical protein |
| ORF36 | 18715 | 21162 | + | 815 | 91.8 | 6.72 | DNA-dependent RNA polymerase |
| ORF37 | 21350 | 21601 | + | 83 | 9.4 | 10.71 | hypothetical protein |
| ORF38 | 21601 | 22074 | + | 157 | 18.1 | 6.65 | hypothetical protein |
| ORF39 | 22019 | 22315 | + | 98 | 10.5 | 9.77 | hypothetical protein |
| ORF40 | 22236 | 22466 | + | 76 | 8.5 | 11.03 | hypothetical protein |
| ORF41 | 22327 | 23859 | + | 510 | 56.2 | 5.00 | head-tail connector protein |
| ORF42 | 23863 | 24831 | + | 322 | 33.2 | 5.37 | scaffolding protein |
| ORF43 | 24884 | 25891 | + | 335 | 37.7 | 5.66 | capsid protein |
| ORF44 | 25969 | 26523 | + | 184 | 21.2 | 6.92 | tail tubular protein A |
| ORF45 | 26526 | 29006 | + | 826 | 92.0 | 5.99 | tail tubular protein B |
| ORF46 | 29006 | 29551 | + | 181 | 18.8 | 8.86 | Internalvirion protein |
| ORF47 | 29551 | 32247 | + | 898 | 98.2 | 5.16 | Internalvirion protein |
| ORF48 | 32251 | 36264 | + | 1337 | 144.0 | 6.23 | Internalvirion protein |
| ORF49 | 36266 | 37021 | + | 251 | 28.4 | 4.56 | putative tail fiber protein |
| ORF50 | 37021 | 37479 | + | 152 | 16.8 | 8.00 | putative tail fiber protein |
| ORF51 | 37472 | 38377 | + | 301 | 33.2 | 7.71 | putative tail fiber protein |
| ORF52 | 38381 | 38986 | + | 201 | 22.6 | 5.65 | putative tail fiber protein |
| ORF53 | 38986 | 39291 | + | 101 | 11.6 | 4.76 | putative DNA maturase A |
| ORF54 | 39300 | 41105 | + | 601 | 67.9 | 7.21 | putative DNA maturase B |
| ORF55 | 41102 | 41302 | + | 66 | 7.0 | 8.93 | Holin |
| ORF56 | 41299 | 41781 | + | 160 | 17.4 | 8.77 | Endolysin |
| ORF57 | 41739 | 42068 | + | 109 | 12.0 | 9.87 | Rz protein |
| ORF58 | 41956 | 42156 | + | 66 | 6.9 | 4.75 | Rz1 protein |
| ORF59 | 42158 | 42472 | + | 104 | 10.5 | 5.65 | putative structural protein |
| ORF60 | 42522 | 42716 | + | 64 | 6.9 | 5.22 | putative structural protein |