Table 2.
Isolate properties relative to JPCM5 reference sequence.
| Isolate Name | Indels | SNPs | Coding SNPs | Synonymous | Non-Synonymous | Fraction of CDS SNPs |
|---|---|---|---|---|---|---|
| 1VLh90 | 2473 | 1254 | 88 | 25 | 63 | 0.07 |
| 2VLh90 | 2487 | 1231 | 83 | 25 | 58 | 0.07 |
| 3VLh90 | 2395 | 1264 | 87 | 26 | 61 | 0.07 |
| 4VLh90 | 2512 | 1252 | 89 | 26 | 63 | 0.07 |
| 5VLh90 | 2422 | 1228 | 94 | 30 | 64 | 0.08 |
| 12VLh | 2407 | 1252 | 93 | 28 | 65 | 0.07 |
| 13VLh | 2399 | 1256 | 99 | 30 | 69 | 0.08 |
| 14VLh | 2416 | 1245 | 88 | 27 | 61 | 0.07 |
| 19VLh | 2453 | 1246 | 90 | 30 | 60 | 0.07 |
| 20VLh | 2435 | 1232 | 86 | 27 | 59 | 0.07 |
| 6CLh | 2430 | 1274 | 91 | 28 | 63 | 0.07 |
| 7VLd | 2432 | 1236 | 93 | 30 | 63 | 0.08 |
| 11VLd | 2420 | 1266 | 93 | 28 | 65 | 0.07 |
| 15VLd | 2452 | 1245 | 91 | 30 | 61 | 0.07 |
| 16VLd | 2435 | 1259 | 93 | 31 | 62 | 0.07 |
| 17VLd | 2455 | 1240 | 84 | 26 | 58 | 0.07 |
| 8Ah | 2462 | 1245 | 89 | 27 | 62 | 0.07 |
| 9Ah | 2440 | 1261 | 92 | 28 | 64 | 0.07 |
| 10Ah | 2444 | 1271 | 91 | 30 | 61 | 0.07 |
| 18Ah | 2416 | 1252 | 89 | 26 | 63 | 0.07 |
Numbers in isolate names indicate the chronological order in which the isolates were collected; VL, visceral leishmaniasis; CL, cutaneous leishmaniasis; A = asymptomatic person; h, human; d, dog; 90, isolated in the 1990s Isolates 19VLh and 20VLh are from the same person.
Indels, insertion/deletions; SNP, single nucleotide polymorphism; CDS, coding sequence.