Table 1. Summary of the complete chloroplast genome characteristics of ten species in Rosaceae.
| Species | Genome size (bp) | LSC size (bp) | SSC size (bp) | IR size (bp) | Number of genes | Protein- coding genes | tRNA genes | rRNA genes | Number of genes duplicated in IR | GC content (%) | GenBank no. | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| F. ×ananassa ‘Benihoppe’ | 155,549 | 85,531 | 18,146 | 25,936 | 112 | 78 (7) | 30 (7) | 4 (4) | 18 | 37.23% | KY358226 | This article |
| F. chiloensis (GP33) | 155,603 | 85,566 | 18,147 | 25,945 | 112 | 78 (7) | 30 (7) | 4 (4) | 18 | 37.22% | JN884816 | Salamone et al. (2013) |
| F. virginiana (O477) | 155,621 | 85,585 | 18,146 | 25,945 | 112 | 78 (7) | 30 (7) | 4 (4) | 18 | 37.23% | JN884817 | Salamone et al. (2013) |
| F. vesca ssp. vesca (Hawaii 4) | 155,691 | 85,605 | 18,174 | 25,956 | 112 | 78 (7) | 30 (7) | 4 (4) | 18 | 37.21% | JF345175 | Shulaev et al. (2011) |
| F. vesca ssp. bracteata (MRD30) | 155,619 | 85,566 | 18,151 | 25,951 | 112 | 78 (7) | 30 (7) | 4 (4) | 18 | 37.23% | KC507755 | Unpublished |
| F. pentaphylla | 155,640 | 85,571 | 18,145 | 25,962 | 112 | 78 (7) | 30 (7) | 4 (4) | 18 | 37.25% | KY434061 | Bai et al. (2017) |
| R. roxburghii | 156,749 | 85,851 | 18,792 | 26,053 | 114 | 79 (7) | 31 (7) | 4 (4) | 18 | 37.23% | KX768420 | Unpublished |
| M. prunifolia (MPRUN20160302) | 160,041 | 88,119 | 19,204 | 26,359 | 111 | 77 (7) | 30 (7) | 4 (4) | 18 | 36.56% | KU851961 | Bao et al. (2016) |
| P. pyrifolia ‘Hosui’ | 159,922 | 87,901 | 19,237 | 26,392 | 111 | 77 (6) | 30 (7) | 4 (4) | 17 | 36.58% | AP012207 | Terakami et al. (2012) |
| P. persica ‘Nemared’ | 157,790 | 85,968 | 19,060 | 26,381 | 112 | 78 (5) | 30 (7) | 4 (4) | 16 | 36.76% | HQ336405 | Jansen et al. (2011) |
Notes.
- LSC
- large single copy
- SSC
- small single copy
- IR
- inverted repeat (A/B)
- bp
- base pairs
Figures in brackets denote the number of genes duplicated in IR.