Table 1. Assembly statistics for both data sets, based on contigs with a minimal length of 500 bp. All program parameters are given in Table S9.
Strain | Assembly | No. of contigs | Total length (bp) | No of Ns | N50 | LAP | CGAL |
---|---|---|---|---|---|---|---|
London | SPAdes | 2555 | 3 792 691 | 0 | 1888 | −11.01048 | −6.90196e+08 |
Minia | 4183 | 2 631 422 | 0 | 930 | −15.69016 | −7.98656e+08 | |
SPAdes-Ragout | 1 | 4 068 385 | 776 139 | – | −12.52232 | −4.8192e+08 | |
SPAdes-MeDuSa | 77 | 4 333 801 | 1917 | 700 415 | −7.97066 | −5.00106e+08 | |
Minia-AGapEs | 5 | 4 441,104 | 0 (313 628) | 3 511 710 | −7.26576 | −3.55155e+08 | |
Marseille | SPAdes | 3201 | 6 072 375 | 0 | 4592 | −11.03336 | −6.0411e+08 |
Minia | 3089 | 3 636 663 | 0 | 1368 | −15.05058 | −8.71446e+08 | |
SPAdes-Ragout | 2 | 4 564 323 | 542 013 | 4 530 296 | −13.34526 | −5.84186e+08 | |
SPAdes-MeDuSa | 2155 | 6 052 372 | 618 | 1 643 585 | −10.88342 | −6.12532e+08 | |
Minia-AGapEs | 6 | 4 350 872 | 0 (184 003) | 3 459 919 | −8.05526 | −4.32647e+08 |