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. 2017 Jul 8;3(9):e000123. doi: 10.1099/mgen.0.000123

Table 1. Assembly statistics for both data sets, based on contigs with a minimal length of 500 bp. All program parameters are given in Table S9.

The lap and cgal likelihoods have been computed based on all reads mapping to any of the reference sequences. Ragout and MeDuSa depend on the quality of the initial assembly in terms of assembled sequence length; hence, we omit results for the Minia assembly here and refer to Table S10.

Strain Assembly No. of contigs Total length (bp) No of Ns N50 LAP CGAL
London SPAdes 2555 3 792 691 0 1888 −11.01048 −6.90196e+08
Minia 4183 2 631 422 0 930 −15.69016 −7.98656e+08
SPAdes-Ragout 1 4 068 385 776 139 −12.52232 −4.8192e+08
SPAdes-MeDuSa 77 4 333 801 1917 700 415 −7.97066 −5.00106e+08
Minia-AGapEs 5 4 441,104 0 (313 628) 3 511 710 −7.26576 −3.55155e+08
Marseille SPAdes 3201 6 072 375 0 4592 −11.03336 −6.0411e+08
Minia 3089 3 636 663 0 1368 −15.05058 −8.71446e+08
SPAdes-Ragout 2 4 564 323 542 013 4 530 296 −13.34526 −5.84186e+08
SPAdes-MeDuSa 2155 6 052 372 618 1 643 585 −10.88342 −6.12532e+08
Minia-AGapEs 6 4 350 872 0 (184 003) 3 459 919 −8.05526 −4.32647e+08