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. 2017 Sep 19;6:e27396. doi: 10.7554/eLife.27396

Table 1. Strains and plasmids used in this study.

Strain/plasmid Description/genotype Reference/source
S. cerevisiae strains
DKY6281 MATα pho8∆::TRP1 leu2-3,112 ura3-52 his3-200 trp1-901 lys2-801 suc2-9
BJ3505 MATα pep4∆::HIS3 prb1-∆1.6R ura3-52 his3-200 trp1-∆101 lys2-801 can1 gal2 (Jones, 2002)
BY4741 MATa his3∆one leu2∆0 met15∆0 ura3∆0 ATCC
BY4741 vam7∆::KAN Invitrogen
AMY1018 BY4741 VAM7::NAT (Qc-wt knock-in; control wt strain) This study
AMY1022 BY4741 vam7(1-289)::NAT (Qc-1∆ knock-in) This study
AMY1021 BY4741 vam7(1-295)::NAT (Qc-3∆ knock-in) This study
AMY1020 BY4741 vam7(1-302)::NAT (Qc-5∆ knock-in) This study
AMY1019 BY4741 vam7(1-309)::NAT (Qc-7∆ knock-in) This study
DNY588 BY4741 VAM7::NAT yck3∆::KAN This study
DNY591 BY4741 vam7(1-289)::NatR yck3∆::KAN This study
DNY589 BY4741 vam7(1-295)::NatR yck3∆::KAN This study
DNY590 BY4741 vam7(1-302)::NatR yck3∆::KAN This study
GOY23 MATα pep4∆::LEU2 prb1∆::LEU2 leu2-3,112 ura3-52 his3-200 trp1-901 lys2-801 suc2-9 (Odorizzi et al., 1998)
AMY87 BJ3505 vam3∆ Merz Lab collection
RSY269 sec17-1 (Novick et al., 1981)
Yeast plasmids
pDN516 ApR 2µ URA3 (Nickerson et al., 2012)
pDN313 pDN516::SEC18 (Lobingier et al., 2014)
pDN314 pDN516::SEC17 (Lobingier et al., 2014)
pDN315 pDN516::SEC17 SEC18 (Lobingier et al., 2014)
pDN365 pDN516::sec17-(F21S, M22S — ‘FSMS’) This study
pDN366 pDN516::sec17-(L291A, L292A —‘LALA’) This study
pRS416 ApR CEN URA3 (Sikorski and Hieter, 1989)
pRS426 ApR 2µ URA3 (Sikorski and Hieter, 1989)
pMS120 VAM7 (pRS426; Qc-wt overproduction) This study
pMS121 vam7(1-289) (pRS426; Qc-1∆ overproduction) This study
pMS122 vam7(1-295) (pRS426; Qc-3∆ overproduction) This study
pMS123 vam7(1-302) (pRS426; Qc-5∆ overproduction) This study
pMS124 vam7(1-309) (pRS426; Qc-7∆ overproduction) This study
pMS125 VAM7 (pAG25) This study
AMP1492 pRS416::SEC17 This study
AMP1774 pRS416::sec17-K159E
AMP1774 pRS416::sec17-K163E This study
AMP1774 pRS416::sec17-K159E,K163E (‘KEKE’) This study
E. coli plasmids
 AMP356 pET41::His6-TEV-VAM7-intein-CBD (Schwartz and Merz, 2009)
 AMP359 pET41::His6-TEV-VAM7(1–289, 1∆)-intein-CBD (Schwartz and Merz, 2009)
 AMP1809 pET41::His6-TEV-VAM7(1–291, 2∆)-intein-CBD This study
 AMP358 pET41::His6-TEV-VAM7(1–295, 3∆)-intein-CBD (Schwartz and Merz, 2009)
 AMP1810 pET41::His6-TEV-VAM7(1–299, 4∆)-intein-CBD This study
 AMP357 pET41::His6-TEV-VAM7(1–302, 5∆)-intein-CBD (Schwartz and Merz, 2009)
 AMP1806 pET41::His6-TEV-VAM7(1–302, AR-5∆)-intein-CBD This study
 AMP1807 pET41::His6-TEV-VAM7(1–302, RA-5∆)-intein-CBD This study
 AMP1808 pET41::His6-TEV-VAM7(1–302, AA-5∆)-intein-CBD This study
 AMP360 pET41::His6-TEV-VAM7(1–309, 7∆)-intein-CBD (Schwartz and Merz, 2009)
 AMP1547 pTYB12::intein-CBD-SEC17 (Schwartz and Merz, 2009)
 AMP1547 pTYB12::intein-CBD-SEC17 (F21R, M22S, L24S, F25R) This study
 AMP1548 pTYB12::intein-CBD-SEC17 (F21R, F25R) This study
 AMP1549 pTYB12::intein-CBD-SEC17 (∆21–25) This study
 AMP1550 pTYB12::intein-CBD-SEC17 (F21S, M22S — ‘FSMS’) This study
 AMP1551 pTYB12::intein-CBD-SEC17 (∆1–26) This study
 AMP1777 pTYB12::intein-CBD-SEC17 (K159E) This study
 AMP1778 pTYB12::intein-CBD-SEC17 (K163E) This study
 AMP1779 pTYB12::intein-CBD-SEC17 (K159E, K163E — ‘KEKE’) This study