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. 2017 Oct 16;7:13303. doi: 10.1038/s41598-017-13416-x

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© The Author(s) 2017

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Distance between the two DNA arms. (a) Representation of considered DNA arms in the crystal structure (1KX5). The first 20 bp of DNA are labeled. Snapshots of WT (white) and R81 A/R88A (orange) at 80 ns were superimposed to show the increased distance between the DNA segments 6–15 bp away from the DNA ends in the mutated systems. (b) and (c) Distance between two DNA arms in RA and RE mutants. The center of mass was used for distance calculation. The running average of every 200 ps is plotted. Black: wild type, Red: R81 mutated, Yellow: R88 mutated, Green: R81 and R88 mutated.