Skip to main content
. 2017 Oct 12;8:1985. doi: 10.3389/fmicb.2017.01985

Table 1.

Metabolites, their molecular formula, function, fragmentation results detected in the exometabolome of D. shibae and P. inhibens, in other studies, a mesocosm (Osterholz et al., 2015) and in a North Sea phytoplankton bloom (Noriega-Ortega et al., in preparation).

Metabolites Molecular formula Function Fragmentation D. shibae P. inhibens Other studies Mesocosm North Sea bloom
HET (4-methyl-5-(β-hydroxyethyl)thiazole) C6H9NOS vitamin B1 precursor + +
Thiamine phosphate C10H15N2O8P vitamin B1 + + G, J
Dimethyl-D-ribityl-lumazine C13H18N4O6 vitamin B2 precursor + + + R
Riboflavin C17H20N4O6 vitamin B2 + + + F, R, G, J
Pantoate C6H12O4 vitamin B5 precursor +
Pantothenate C9H17NO5 vitamin B5 + + G, J
Pyridoxal C8H9NO3 vitamin B6 related + + + +
Pyridoxal phosphate C8H10NO6P vitamin B6 + +
Dethiobiotin C10H17N2O3 vitamin B7 precursor +
Alpha-ribazole C14H18N2O4 vitamin B12 precursor + + + R, J + +
Alpha-ribazole-5-phosphate C14H19N2O7P vitamin B12 precursor + + +
Pyrroloquinoline quinone C14H6N2O8 vit. B - cofactor + +
6-(2-amino-2-carboxylatoethyl)−1,2,3,4-tetrahydroquinoline-2,4-dicarboxylate C14H14N2O6 vit. B - cofactor + + +
Methyl (indole-3-yl)acetate C11H11NO2 IAA related + + +
Tryptophan C11H12N2O2 IAA precursor + + F, R, G +
Indole_acetate C10H9NO2 IAA + F
2,3-dihydroxybenzoate C7H5O4 siderophore building block + F
3-4-dihydroxybenzoate C7H6O4 siderophore building block +
PAI-1 (N-(3-oxododecanoyl)-L-homoserine lactone) C16H27NO4 quorum-sensing + + +
AAI C12H19NO4 quorum-sensing + + +
VAI-2 C12H21NO3 quorum-sensing + +
VAI-1 C10H15NO4 quorum-sensing + + + +
HAI-1 C8H13NO4 quorum-sensing + + +
N-3-hydroxydecanoyl-L-homoserine lactone C14H25NO4 quorum-sensing + + J
Porphobilinogen C10H14N2O4 AA derivate + + + +
Tyrosine C9H11NO3 AA + + R, G + +
Arogenate C10H13NO5 AA precursor + + R + +
4-Hydroxy-phenylpyruvate C9H8O4 AA precursor + + + +
Phenylalanine C9H11NO2 AA + F, R, G + +
L-SDAP C11H18N2O7 AA precursor + +
2-Isopropylmaleate C7H10O4 AA precursor + + R +
Delta-piperideine-2-6-dicarboxylate C7H9NO4 AA precursor + + + +
O-Acetyl-L-homoserine C6H11NO4 AA derivate + + +
Histidine C6H9N3O2 AA + + G, J
Miraxanthin V C17H18N2O6 betaxanthine + + +
L-Dihydroxy-phenylalanine C9H11NO4 betaxanthine + + +
Glutathione C10H17N3O6S defense + + R
Tropodithietic acid C8H4O3S2 antibiotic + +
Inosine C10H12N4O5 purin metabolism + + F, R
Thymidine C10H14N2O5 + R + +
Deoxycytidine C9H13N3O4 + +
Phenylacetylcarbinol C9H10O2 + +
S-Methyl phenylethanethioate C9H10OS + T

F, Fiore et al. (2015); G, Garcia et al. (2015); J, Johnson et al. (2016); R, Romano et al. (2014); T, Thiel et al. (2010). Garcia et al. inferred the metabolites in cocultures on the basis of genomic information. +, Detected; AA, amino acid; IAA, indole acetic acid.