Table 3.

List of genes in which allele frequency shifts were detected in two or more independent experiments (i.e. selection experiment; TRT15 experiment; comparison between resistant and sensitive field isolates). Allele frequency shifts in the gene TcIL3000.11.4410 were identified in all three experiments (bold). Two genes showed allele frequency shifts in the MSOROM7 resistant lines and TRT15p10-ISM isolate (underlined). Allele frequency shifts were detected in 10 common genes between the MSOROM7 resistant lines and the field isolates (italic; red). An additional four genes showed allele frequency shifts in both TRT15p10-ISM and the field isolates.