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. 2016 Aug 2;38:20–37. doi: 10.3767/003158517X692788

Table 2a.

Strains used for the phylogenetic analysis of the Colletotrichum gloeosporioides species complex and other species with details about host, location, and GenBank accession numbers.

Species Isolate Host Location GenBank accessions
ITS GAPDH CAL ACT CHS-1 TUB2
C. aenigma ICMP 18686 Pyrus pyrifolia Japan JX010243 JX009913 JX009684 JX009519 JX009789 JX010390
ICMP 18608* Persea americana Israel JX010244 JX010044 JX009683 JX009443 JX009774 JX010389
C. aeschynomenes ICMP 17673* Aeschynomene virginica USA JX010176 JX009930 JX009721 JX009483 JX009799 JX010392
C. alatae CBS 304.67* Dioscorea alata India JX010190 JX009990 JX009738 JX009471 JX009837 JX010383
ICMP 18122 Dioscorea alata Nigeria JX010191 JX010011 JX009739 JX009470 JX009846 JX010449
C. alienum ICMP 12071* Malus domestica New Zealand JX010251 JX010028 JX009654 JX009572 JX009882 JX010411
ICMP 18621 Persea americana New Zealand JX010246 JX009959 JX009657 JX009552 JX009755 JX010386
C. aotearoa ICMP 18537* Coprosma sp. New Zealand JX010205 JX010005 JX009611 JX009564 JX009853 JX010420
C. asianum ICMP 18580* Coffea arabica Thailand FJ972612 JX010053 FJ917506 JX009584 JX009867 JX010406
ICMP 18696 Mangifera indica Australia JX010192 JX009915 JX009723 JX009576 JX009753 JX010384
C. boninense MAFF 305972* Crinum asiaticum var. sinicum Japan JX010292 JX009905 JQ005674 JX009583 JX009827 JQ005588
CBS 128547 Camellia sp. New Zealand JQ005159 JQ005246 JQ005680 JQ005507 JQ005333 JQ005593
C. brevisporum BCC 38876* Neoregalia sp. Thailand JN050238 JN050238 JN050222 JN050216 KF687760 JN050244
MFLUCC100182 Pandanus pygmaeus Thailand JN050239 JN050228 JN050217 JN050245
C. clidemiae ICMP 18706 Clidemia hirta USA JX010274 JX009909 JX009639 JX009476 JX009777 JX010439
C. cliviae CBS 125375* Clivia miniata China JX519223 JX546611 JX519240 JX519232 JX519249
CSSS1 Clivia miniata China GU109479 GU085867 GU085861 GU085869
CSSS2 Clivia miniata China GU109480 GU085868 GU085862 GU085870
CAUOS6 Capsicum annuum China KP890123 KP890100 KP890131 KP890115
C. conoides CAUG17* Capsicum annuum China KP890168 KP890162 KP890150 KP890144 KP890156 KP890174
CAUG33 Capsicum annuum China KP890169 KP890163 KP890151 KP890145 KP890157 KP890175
CAUG34 Capsicum annuum China KP890170 KP890164 KP890152 KP890146 KP890158 KP890176
C. cordylinicola ICMP 18579 Cordyline fruticosa Thailand JX010226 JX009975 HM470238 HM470235 JX009864 JX010440
C. dracaenophilum CBS 118199* Dracaena sp. China JX519222 JX546707 JX519238 JX519230 JX519247
C. endophytica CAUG28 Capsicum annuum China KP145441 KP145413 KP145357 KP145329 KP145385 KP145469
LC0324* Pennisetu purpureum Thailand KC633854 KC832854 KC810018 KF306258
MFLUCC 100676 Pennisetu purpureum Thailand KF242123 KF242181 KF254846 KF157827
C. fructicola CAUG1 Capsicum sp. China KP145416 KP145388 KP145332 KP145304 KP145360 KP145444
CAUG5 Capsicum sp. China KP145420 KP145392 KP145336 KP145308 KP145364 KP145448
CAUG6 Capsicum sp. China KP145421 KP145393 KP145337 KP145309 KP145365 KP145449
CAUG8 Capsicum sp. China KP145422 KP145394 KP145338 KP145310 KP145366 KP145450
CAUG10 Capsicum sp. China KP145424 KP145396 KP145340 KP145312 KP145368 KP145452
CAUG11 Capsicum sp. China KP145425 KP145397 KP145341 KP145313 KP145369 KP145453
CAUG16 Capsicum sp. China KP145430 KP145402 KP145346 KP145318 KP145374 KP145458
CAUG18 Capsicum sp. China KP145431 KP145403 KP145347 KP145319 KP145375 KP145459
CBS 125395 Theobroma cacao Panama JX010172 JX009992 JX009666 JX009543 JX009873 JX010408
ICMP 17789 Malus domestica USA JX010178 JX009914 JX009665 JX009451 JX009809
ICMP 12568 Persea americana Australia JX010166 JX009946 JX009680 JX009529 JX009762
ICMP 18581* Coffea arabica Thailand JX010165 JX010033 FJ917508 FJ907426 JX009866 JX010405
ICMP 18613 Limonium sinuatum Israel JX010167 JX009998 JX009675 JX009491 JX009772 JX010388
ICMP 18727 Fragaria ananassa USA JX010179 JX010035 JX009682 JX009565 JX009812 JX010394
CBS 238.49* Ficus edulis Germany JX010181 JX009923 JX009671 JX009495 JX009839 JX010400
CBS 125397* Tetragastris panamensis Panama JX010173 JX010032 JX009674 JX009581 JX009874 JX010409
C. gloeosporiodes CAUG2 Capsicum sp. China KP145417 KP145389 KP145333 KP145305 KP145361 KP145445
CAUG3 Capsicum sp. China KP145418 KP145390 KP145334 KP145306 KP145362 KP145446
CAUG12 Capsicum sp. China KP145426 KP145398 KP145342 KP145314 KP145370 KP145454
CAUG13 Capsicum sp. China KP145427 KP145399 KP145343 KP145315 KP145371 KP145455
CAUG14 Capsicum sp. China KP145428 KP145400 KP145344 KP145316 KP145372 KP145456
CAUG15 Capsicum sp. China KP145429 KP145401 KP145345 KP145317 KP145373 KP145457
CAUG19 Capsicum sp. China KP145432 KP145404 KP145348 KP145320 KP145376 KP145460
CAUG20 Capsicum sp. China KP145433 KP145405 KP145349 KP145321 KP145377 KP145461
CAUG22 Capsicum sp. China KP145435 KP145407 KP145351 KP145323 KP145379 KP145463
CAUG23 Capsicum sp. China KP145436 KP145408 KP145352 KP145324 KP145380 KP145464
CAUG24 Capsicum sp. China KP145437 KP145409 KP145353 KP145325 KP145381 KP145465
CAUG25 Capsicum sp. China KP145438 KP145410 KP145354 KP145326 KP145382 KP145466
CAUG26 Capsicum sp. China KP145439 KP145411 KP145355 KP145327 KP145383 KP145467
CAUG29 Capsicum sp. China KP145442 KP145414 KP145358 KP145330 KP145386 KP145470
IMI 356878* Citrus sinensis Italy JX010152 JX010056 JX009731 JX009531 JX009818 JX010445
CORCG4 Vanda sp. Thailand HM034808 HM034806 HM034802 HM034800
CORCG5 Vanda sp. Thailand HM034809 HM034807 HM034803 HM034801 HM034805 HM034811
C. grevillea CBS 132879* Grevillea sp. Italy KC297078 KC297010 KC296963 KC296941 KC296987 KC297102
C. grossum CAUG7* Capsicum sp. China KP890165 KP890159 KP890147 KP890141 KP890153 KP890171
CAU31 Capsicum sp. China KP890166 KP890160 KP890148 KP890142 KP890154 KP890172
CAUG32 Capsicum sp. China KP890167 KP890161 KP890149 KP890143 KP890155 KP890173
C. hebeiense JZB330024 Vitis vinifera cv. Cabernet Sauvignon China KF156873 KF377505 KF377542
JZB330028* Vitis vinifera cv. Cabernet Sauvignon China KF156863 KF377495 KF377532 KF289008 KF288975
C. hymenocallidis CAUG9 Capsicum sp. China KP145423 KP145395 KP145339 KP145311 KP145367 KP145451
ICMP 18642* Hymenocallis americana China JX010278 JX010019 JX009709 GQ856775 GQ856730 JX010410
C. kahawae subsp. ciggaro ICMP 12952 Persea americana New Zealand JX010214 JX009971 JX009648 JX009431 JX009757 JX010426
ICMP 18539* Olea europaea Australia JX010230 JX009966 JX009635 JX009523 JX009800 JX010434
C. karstii CGMCC 3.14194* Vanda sp. China HM585409 HM585391 HM581995 HM585428
CAUOS1 Capsicum sp. China KP890103 KP890134 KP890118 KP890096 KP890126 KP890110
CAUOS7 Capsicum sp. China KP890108 KP890139 KP890124 KP890101 KP890132 KP890116
CAUOS8 Capsicum sp. China KP890109 KP890140 KP890125 KP890102 KP890133 KP890117
C. liaoningense CAUOS2* Capsicum sp. China KP890104 KP890135 KP890119 KP890097 KP890127 KP890111
CAUOS3 Capsicum sp. China KP890105 KP890136 KP890120 KP890098 KP890128 KP890112
CAUOS4 Capsicum sp. China KP890106 KP890137 KP890121 KP890099 KP890129 KP890113
CAUOS5 Capsicum sp. China KP890107 KP890138 KP890122 KP890130 KP890114
C. musae ICMP 19119* Musa sp. USA JX010146 JX010050 JX009742 JX009433 JX009896 HQ596280
IMI 52264 Musa sapientum Kenya JX010142 JX010015 JX009689 JX009432 JX009815 JX010395
C. nupharicola ICMP 17938 Nuphar lutea subsp. polysepala USA JX010189 JX009936 JX009661 JX009486 JX009834 JX010397
ICMP 17940 Nymphaea ordorata USA JX010188 JX010031 JX009662 JX009582 JX009836 JX010399
ICMP 18187* Nuphar lutea subsp. polysepala USA JX010187 JX009972 JX009663 JX009437 JX009835 JX010398
C. psidii ICMP 19120* Psidium sp. Italy JX010219 JX009967 JX009743 JX009515 JX009901 JX010443
C. queenslandicum ICMP 1778* Carica papaya Australia JX010276 JX009934 JX009691 JX009447 JX009899 JX010414
C. salsolae ICMP 19051 Salsola tragus Hungary JX010242 JX009916 JX009696 JX009562 JX009863 JX010403
C. siamense CBS 130420 Jasminum sambac Vietnam HM131511 HM131497 JX009713 HM131507 JX009895 JX010415
C. thailandicum BCC 38879* Hibiscus rosasinensis Thailand JN050242 JN050231 JN050220 JN050248
MFLUCC10092 Alocasia sp. Thailand JN050243 JN050232 JN050221 JN050249
C. theobromicola CBS 124945* Theobroma cacao Panama JX010294 JX010006 JX009591 JX009444 JX009869 JX010447
ICMP 17814 Fragaria vesca USA JX010288 JX010003 JX009589 JX009448 JX009819 JX010379
ICMP 17957 Stylosanthes viscosa Australia JX010289 JX009962 JX009597 JX009575 JX009821 JX010380
C. ti ICMP 4832* Cordyline sp. New Zealand JX010269 JX009952 JX009649 JX009520 JX009898 JX010442
ICMP 5285 Cordyline australis New Zealand JX010267 JX009910 JX009650 JX009553 JX009897 JX010441
C. tropicale CBS 124949* Theobroma cacao Panama JX010264 JX010007 JX009719 JX009489 JX009870 JX010407
ICMP 18672 Litchi chinensis Japan JX010275 JX010020 JX009722 JX009480 JX009826 JX010396
C. tropicicola BCC 38877* Citrus maxima Thailand JN050240 JN050229 JN050218 JN050246
MFLUCC100167 Paphiopedilum bellatolum Thailand JN050241 JN050230 JN050219 JN050247
C. viniferum CAUG27 Capsicum sp. China KP145440 KP145412 KP145356 KP145328 KP145384 KP145468
GZAAS 5.08601* Vitis vinifera, cv. ‘Shuijing’ China JN412804 JN412798 JQ309639 JN412795 JN412813
GZSSS 5.08608 Vitis vinifera, cv. ‘Hongti’ China JN412802 JN412800 JQ412782 JN412793 JN412811
C. xanthorrhoeae ICMP 17903* Xanthorrhoea preissii Australia JX010261 JX009927 JX009653 JX009478 JX009823 JX010448
C. yunnanense CBS 132135* Buxus sp. China JX546804 JX519248 JX546706 JX519239 JX519231
Glomella cingulata ICMP 10643 Camellia williamsii UK JX010224 JX009908 JX009630 JX009540 JX009891 JX010436
‘f. sp. camelliae’
Monilochaetes infuscans CBS 869.96* Ipomoea batatas South Africa JQ005780 JX546612 JQ005843 JQ005801 JQ005864

* = Ex-type culture. Strains studied in this paper are in bold font.