Skip to main content
. 2017 Oct 18;2(5):e00334-17. doi: 10.1128/mSphere.00334-17

TABLE 1 .

Distances of the salt bridge interactions at the chain A-chain B interface of P domain of Fab2D3/MNV1 final conformations from the MDFF simulationsa

Chain A; open conformation Chain B; closed conformation Cryo-EM reconstruction R (Å) Open conformation R (Å) Closed conformation fitted R (Å) Closed conformation V339I mutation R (Å)
ASP313 [OD1] ARG 238 [NH1] 3.57
ASP313 [OD2] ARG 238 [NE] 3.14
ASP313 [OD2] ARG 238 [NH1] 3.28
ASP313 [OD2] ARG 238 [NH2] 3.93
GLU338 [OE1] ARG396 [NE] 3.90
GLU338 [OE1] ARG396 [NH1] 2.76
GLU338 [OE1] ARG396 [NH2] 3.65 3.40
GLU338 [OE2] ARG396 [NH1] 2.63
GLU338 [OE2] ARG396 [NH2] 3.12 3.44
GLU338 [OE2] ARG 437 [NH2] 2.75
ARG396 [NH1] GLU338 [OE1] 2.85 3.92
ARG396 [NH1] GLU338 [OE2] 3.16 3.91 3.31
ARG396 [NH2] GLU338 [OE2] 2.58 3.57 3.57
ARG396 [NH2] GLU338 [OE1] 3.81 2.98
ARG396 [NE] GLU338 [OE2] 3.49
a

The structures are identified by the conformation of the P domain, A, B, and V339I mutation. Empty cells indicate the lack of interactions.