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Topological accuracy of ML versus Bayesian reconstructions for the most discordant comparison identified by PEA (see the text). D measures how much larger ML distances are from the true tree (dML) than are Bayesian distances (dBMR). MLE trees are indeed less accurate than BMRs (DMLE; mean = 17.63), but when conventional bootstrap thresholds are employed the difference in efficacy disappears (DML50; mean = 0.43).
